Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02815
Experiment: K5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | K5 |
---|---|---|---|---|---|
remove | |||||
471,518 | + | -1.1 | |||
471,581 | + | -0.3 | |||
471,802 | - | gatA | HEPCGN_02805 | 0.49 | -0.2 |
471,809 | - | gatA | HEPCGN_02805 | 0.50 | +1.7 |
472,012 | - | +0.3 | |||
472,112 | + | gatB | HEPCGN_02810 | 0.16 | -0.0 |
472,520 | - | gatB | HEPCGN_02815 | 0.12 | +0.6 |
472,695 | - | gatB | HEPCGN_02815 | 0.25 | +0.6 |
472,708 | + | gatB | HEPCGN_02815 | 0.26 | +0.7 |
472,709 | - | gatB | HEPCGN_02815 | 0.26 | -0.2 |
472,718 | + | gatB | HEPCGN_02815 | 0.27 | +0.3 |
472,827 | - | gatB | HEPCGN_02815 | 0.35 | +0.4 |
472,886 | + | gatB | HEPCGN_02815 | 0.39 | -0.8 |
472,908 | + | gatB | HEPCGN_02815 | 0.41 | +0.2 |
472,908 | + | gatB | HEPCGN_02815 | 0.41 | +0.5 |
472,909 | - | gatB | HEPCGN_02815 | 0.41 | -0.6 |
472,911 | - | gatB | HEPCGN_02815 | 0.41 | +0.6 |
472,911 | - | gatB | HEPCGN_02815 | 0.41 | -0.2 |
472,940 | + | gatB | HEPCGN_02815 | 0.43 | -0.3 |
472,940 | + | gatB | HEPCGN_02815 | 0.43 | -0.5 |
472,940 | + | gatB | HEPCGN_02815 | 0.43 | +0.0 |
472,940 | + | gatB | HEPCGN_02815 | 0.43 | +0.9 |
473,090 | - | gatB | HEPCGN_02815 | 0.54 | +0.8 |
473,150 | + | gatB | HEPCGN_02815 | 0.59 | -0.4 |
473,150 | + | gatB | HEPCGN_02815 | 0.59 | +0.4 |
473,151 | - | gatB | HEPCGN_02815 | 0.59 | -0.7 |
473,198 | - | gatB | HEPCGN_02815 | 0.62 | +2.5 |
473,475 | - | gatB | HEPCGN_02815 | 0.83 | +0.7 |
473,529 | - | gatB | HEPCGN_02815 | 0.87 | -0.4 |
473,866 | - | gatD | HEPCGN_02820 | 0.11 | +0.1 |
473,979 | + | gatD | HEPCGN_02820 | 0.21 | +0.9 |
474,250 | + | gatD | HEPCGN_02820 | 0.47 | -1.1 |
474,253 | + | gatD | HEPCGN_02820 | 0.48 | +0.3 |
474,334 | + | gatD | HEPCGN_02820 | 0.56 | -1.0 |
474,334 | + | gatD | HEPCGN_02820 | 0.56 | -0.4 |
474,415 | - | gatD | HEPCGN_02820 | 0.63 | -0.2 |
474,623 | + | gatD | HEPCGN_02820 | 0.83 | +0.1 |
474,624 | - | gatD | HEPCGN_02820 | 0.83 | +0.8 |
Or see this region's nucleotide sequence