Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gatZ and gatA are separated by 9 nucleotides gatA and gatB are separated by 30 nucleotides gatB and gatB are separated by 3 nucleotides gatB and gatD are separated by 47 nucleotides
HEPCGN_02800: gatZ - tagatose-bisphosphate aldolase subunit GatZ, at 470,310 to 471,572
gatZ
HEPCGN_02805: gatA - PTS galactitol transporter subunit IIA, at 471,582 to 472,034
gatA
HEPCGN_02810: gatB - PTS galactitol transporter subunit IIB, at 472,065 to 472,349
gatB
HEPCGN_02815: gatB - PTS galactitol transporter subunit IIB, at 472,353 to 473,708
gatB
HEPCGN_02820: gatD - galactitol-1-phosphate 5-dehydrogenase, at 473,756 to 474,796
gatD
Position (kb) 472
473
474 Strain fitness (log2 ratio) -1
0
1
2 at 471.518 kb on + strand at 471.581 kb on + strand at 471.802 kb on - strand, within gatA at 471.809 kb on - strand, within gatA at 472.012 kb on - strand at 472.112 kb on + strand, within gatB at 472.520 kb on - strand, within gatB at 472.695 kb on - strand, within gatB at 472.708 kb on + strand, within gatB at 472.709 kb on - strand, within gatB at 472.718 kb on + strand, within gatB at 472.827 kb on - strand, within gatB at 472.886 kb on + strand, within gatB at 472.908 kb on + strand, within gatB at 472.908 kb on + strand, within gatB at 472.909 kb on - strand, within gatB at 472.911 kb on - strand, within gatB at 472.911 kb on - strand, within gatB at 472.940 kb on + strand, within gatB at 472.940 kb on + strand, within gatB at 472.940 kb on + strand, within gatB at 472.940 kb on + strand, within gatB at 473.090 kb on - strand, within gatB at 473.150 kb on + strand, within gatB at 473.150 kb on + strand, within gatB at 473.151 kb on - strand, within gatB at 473.198 kb on - strand, within gatB at 473.475 kb on - strand, within gatB at 473.529 kb on - strand, within gatB at 473.866 kb on - strand, within gatD at 473.979 kb on + strand, within gatD at 474.250 kb on + strand, within gatD at 474.253 kb on + strand, within gatD at 474.334 kb on + strand, within gatD at 474.334 kb on + strand, within gatD at 474.415 kb on - strand, within gatD at 474.623 kb on + strand, within gatD at 474.624 kb on - strand, within gatD
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 471,518 + -1.1 471,581 + -0.3 471,802 - gatA HEPCGN_02805 0.49 -0.2 471,809 - gatA HEPCGN_02805 0.50 +1.7 472,012 - +0.3 472,112 + gatB HEPCGN_02810 0.16 -0.0 472,520 - gatB HEPCGN_02815 0.12 +0.6 472,695 - gatB HEPCGN_02815 0.25 +0.6 472,708 + gatB HEPCGN_02815 0.26 +0.7 472,709 - gatB HEPCGN_02815 0.26 -0.2 472,718 + gatB HEPCGN_02815 0.27 +0.3 472,827 - gatB HEPCGN_02815 0.35 +0.4 472,886 + gatB HEPCGN_02815 0.39 -0.8 472,908 + gatB HEPCGN_02815 0.41 +0.2 472,908 + gatB HEPCGN_02815 0.41 +0.5 472,909 - gatB HEPCGN_02815 0.41 -0.6 472,911 - gatB HEPCGN_02815 0.41 +0.6 472,911 - gatB HEPCGN_02815 0.41 -0.2 472,940 + gatB HEPCGN_02815 0.43 -0.3 472,940 + gatB HEPCGN_02815 0.43 -0.5 472,940 + gatB HEPCGN_02815 0.43 +0.0 472,940 + gatB HEPCGN_02815 0.43 +0.9 473,090 - gatB HEPCGN_02815 0.54 +0.8 473,150 + gatB HEPCGN_02815 0.59 -0.4 473,150 + gatB HEPCGN_02815 0.59 +0.4 473,151 - gatB HEPCGN_02815 0.59 -0.7 473,198 - gatB HEPCGN_02815 0.62 +2.5 473,475 - gatB HEPCGN_02815 0.83 +0.7 473,529 - gatB HEPCGN_02815 0.87 -0.4 473,866 - gatD HEPCGN_02820 0.11 +0.1 473,979 + gatD HEPCGN_02820 0.21 +0.9 474,250 + gatD HEPCGN_02820 0.47 -1.1 474,253 + gatD HEPCGN_02820 0.48 +0.3 474,334 + gatD HEPCGN_02820 0.56 -1.0 474,334 + gatD HEPCGN_02820 0.56 -0.4 474,415 - gatD HEPCGN_02820 0.63 -0.2 474,623 + gatD HEPCGN_02820 0.83 +0.1 474,624 - gatD HEPCGN_02820 0.83 +0.8
Or see this region's nucleotide sequence