Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02700 and metG are separated by 140 nucleotides metG and apbC are separated by 131 nucleotides
HEPCGN_02700: HEPCGN_02700 - molybdate metabolism regulator, at 446,453 to 450,259
_02700
HEPCGN_02705: metG - methionine--tRNA ligase, at 450,400 to 452,433
metG
HEPCGN_02710: apbC - iron-sulfur cluster carrier protein ApbC, at 452,565 to 453,674
apbC
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 449.468 kb on - strand, within HEPCGN_02700 at 449.471 kb on + strand, within HEPCGN_02700 at 449.472 kb on - strand, within HEPCGN_02700 at 449.520 kb on - strand, within HEPCGN_02700 at 449.520 kb on - strand, within HEPCGN_02700 at 449.599 kb on + strand, within HEPCGN_02700 at 449.599 kb on + strand, within HEPCGN_02700 at 449.601 kb on + strand, within HEPCGN_02700 at 449.601 kb on + strand, within HEPCGN_02700 at 449.602 kb on - strand, within HEPCGN_02700 at 449.663 kb on + strand, within HEPCGN_02700 at 449.664 kb on - strand, within HEPCGN_02700 at 449.686 kb on + strand, within HEPCGN_02700 at 449.703 kb on - strand, within HEPCGN_02700 at 449.771 kb on + strand, within HEPCGN_02700 at 449.846 kb on - strand, within HEPCGN_02700 at 449.864 kb on + strand, within HEPCGN_02700 at 449.865 kb on - strand, within HEPCGN_02700 at 449.995 kb on + strand at 450.041 kb on - strand at 450.069 kb on + strand at 450.070 kb on - strand at 450.070 kb on - strand at 450.100 kb on + strand at 450.184 kb on + strand at 450.184 kb on + strand at 450.185 kb on - strand at 450.185 kb on - strand at 450.309 kb on + strand at 450.360 kb on + strand at 450.760 kb on - strand, within metG at 452.468 kb on - strand at 452.497 kb on - strand at 452.500 kb on + strand at 452.509 kb on - strand at 452.521 kb on + strand at 452.527 kb on - strand at 452.542 kb on - strand at 452.727 kb on - strand, within apbC at 452.774 kb on + strand, within apbC at 453.284 kb on - strand, within apbC at 453.284 kb on - strand, within apbC at 453.408 kb on - strand, within apbC at 453.416 kb on + strand, within apbC
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 449,468 - HEPCGN_02700 0.79 -0.5 449,471 + HEPCGN_02700 0.79 -0.1 449,472 - HEPCGN_02700 0.79 +0.3 449,520 - HEPCGN_02700 0.81 +0.5 449,520 - HEPCGN_02700 0.81 -1.9 449,599 + HEPCGN_02700 0.83 +0.6 449,599 + HEPCGN_02700 0.83 +1.2 449,601 + HEPCGN_02700 0.83 +0.3 449,601 + HEPCGN_02700 0.83 -1.4 449,602 - HEPCGN_02700 0.83 +0.5 449,663 + HEPCGN_02700 0.84 +0.6 449,664 - HEPCGN_02700 0.84 -0.5 449,686 + HEPCGN_02700 0.85 -0.4 449,703 - HEPCGN_02700 0.85 +0.0 449,771 + HEPCGN_02700 0.87 -0.8 449,846 - HEPCGN_02700 0.89 +0.0 449,864 + HEPCGN_02700 0.90 -0.7 449,865 - HEPCGN_02700 0.90 +0.3 449,995 + -0.1 450,041 - +0.9 450,069 + +0.1 450,070 - -0.2 450,070 - -0.5 450,100 + -1.5 450,184 + +4.1 450,184 + +0.9 450,185 - -0.2 450,185 - -0.2 450,309 + -0.5 450,360 + -0.9 450,760 - metG HEPCGN_02705 0.18 +0.6 452,468 - +0.2 452,497 - -1.4 452,500 + +0.0 452,509 - -0.8 452,521 + +0.5 452,527 - +0.6 452,542 - -1.0 452,727 - apbC HEPCGN_02710 0.15 -1.0 452,774 + apbC HEPCGN_02710 0.19 +0.1 453,284 - apbC HEPCGN_02710 0.65 -0.1 453,284 - apbC HEPCGN_02710 0.65 -0.2 453,408 - apbC HEPCGN_02710 0.76 +0.3 453,416 + apbC HEPCGN_02710 0.77 +0.1
Or see this region's nucleotide sequence