Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02610 and HEPCGN_02615 overlap by 4 nucleotides HEPCGN_02615 and HEPCGN_02620 are separated by 9 nucleotides HEPCGN_02620 and HEPCGN_02625 are separated by 117 nucleotides HEPCGN_02625 and HEPCGN_02630 are separated by 213 nucleotides HEPCGN_02630 and btsS are separated by 221 nucleotides
HEPCGN_02610: HEPCGN_02610 - phage tail protein, at 424,362 to 426,422
_02610
HEPCGN_02615: HEPCGN_02615 - hypothetical protein, at 426,419 to 426,697
_02615
HEPCGN_02620: HEPCGN_02620 - Ybl63, at 426,707 to 427,003
_02620
HEPCGN_02625: HEPCGN_02625 - damage-inducible protein DinI, at 427,121 to 427,369
_02625
HEPCGN_02630: HEPCGN_02630 - IS4 family transposase, at 427,583 to 427,651
_02630
HEPCGN_02635: btsS - two-component regulatory system sensor histidine kinase BtsS, at 427,873 to 429,558
btsS
Position (kb) 426
427
428 Strain fitness (log2 ratio) -1
0
1 at 426.017 kb on + strand, within HEPCGN_02610 at 426.017 kb on + strand, within HEPCGN_02610 at 426.138 kb on + strand, within HEPCGN_02610 at 426.231 kb on - strand at 426.242 kb on - strand at 426.254 kb on + strand at 426.256 kb on + strand at 426.286 kb on - strand at 426.288 kb on - strand at 426.744 kb on + strand, within HEPCGN_02620 at 426.745 kb on - strand, within HEPCGN_02620 at 426.809 kb on - strand, within HEPCGN_02620 at 427.068 kb on - strand at 427.273 kb on + strand, within HEPCGN_02625 at 427.273 kb on + strand, within HEPCGN_02625 at 427.274 kb on - strand, within HEPCGN_02625 at 427.351 kb on + strand at 427.393 kb on - strand at 427.444 kb on - strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.462 kb on - strand at 427.462 kb on - strand at 427.737 kb on - strand at 427.779 kb on - strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.836 kb on - strand at 427.836 kb on - strand at 427.876 kb on + strand at 427.877 kb on - strand at 427.947 kb on + strand at 427.947 kb on + strand at 427.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 426,017 + HEPCGN_02610 0.80 +0.6 426,017 + HEPCGN_02610 0.80 -1.1 426,138 + HEPCGN_02610 0.86 -0.1 426,231 - -0.4 426,242 - +0.8 426,254 + +1.2 426,256 + -0.3 426,286 - +0.1 426,288 - -0.4 426,744 + HEPCGN_02620 0.12 -0.8 426,745 - HEPCGN_02620 0.13 -0.4 426,809 - HEPCGN_02620 0.34 -0.4 427,068 - -0.0 427,273 + HEPCGN_02625 0.61 +0.6 427,273 + HEPCGN_02625 0.61 +0.2 427,274 - HEPCGN_02625 0.61 -0.2 427,351 + +0.5 427,393 - +0.5 427,444 - -0.9 427,461 + -0.2 427,461 + +0.4 427,461 + -0.2 427,461 + +1.4 427,461 + +0.7 427,461 + +0.1 427,462 - +0.2 427,462 - -0.4 427,737 - -0.0 427,779 - -0.9 427,835 + +1.1 427,835 + -1.0 427,835 + +0.9 427,835 + -0.2 427,836 - -0.8 427,836 - +1.1 427,876 + +0.9 427,877 - -0.0 427,947 + +0.0 427,947 + +0.2 427,959 - +0.7
Or see this region's nucleotide sequence