Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02465 and HEPCGN_02470 are separated by 95 nucleotides HEPCGN_02470 and HEPCGN_02475 are separated by 36 nucleotides HEPCGN_02475 and HEPCGN_02480 are separated by 221 nucleotides HEPCGN_02480 and HEPCGN_02485 are separated by 1 nucleotides
HEPCGN_02465: HEPCGN_02465 - Phage protein, at 399,864 to 400,352
_02465
HEPCGN_02470: HEPCGN_02470 - DUF1327 domain-containing protein, at 400,448 to 400,852
_02470
HEPCGN_02475: HEPCGN_02475 - SAR-endolysin, at 400,889 to 401,422
_02475
HEPCGN_02480: HEPCGN_02480 - Membrane protein, at 401,644 to 401,757
_02480
HEPCGN_02485: HEPCGN_02485 - lysis protein, at 401,759 to 402,226
_02485
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.902 kb on + strand at 399.903 kb on - strand at 399.903 kb on - strand at 399.920 kb on + strand, within HEPCGN_02465 at 399.984 kb on - strand, within HEPCGN_02465 at 400.020 kb on + strand, within HEPCGN_02465 at 400.149 kb on + strand, within HEPCGN_02465 at 400.175 kb on + strand, within HEPCGN_02465 at 400.328 kb on + strand at 400.328 kb on + strand at 400.351 kb on - strand at 400.557 kb on + strand, within HEPCGN_02470 at 400.557 kb on + strand, within HEPCGN_02470 at 400.582 kb on - strand, within HEPCGN_02470 at 400.649 kb on - strand, within HEPCGN_02470 at 400.739 kb on - strand, within HEPCGN_02470 at 400.833 kb on - strand at 400.846 kb on + strand at 400.876 kb on - strand at 400.879 kb on + strand at 400.879 kb on + strand at 400.880 kb on - strand at 400.882 kb on + strand at 400.884 kb on + strand at 401.269 kb on + strand, within HEPCGN_02475 at 401.354 kb on - strand, within HEPCGN_02475 at 401.420 kb on + strand at 401.581 kb on + strand at 401.581 kb on + strand at 401.582 kb on - strand at 401.685 kb on - strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.717 kb on + strand, within HEPCGN_02480 at 401.856 kb on - strand, within HEPCGN_02485 at 401.912 kb on - strand, within HEPCGN_02485 at 402.098 kb on - strand, within HEPCGN_02485 at 402.200 kb on + strand at 402.200 kb on + strand at 402.200 kb on + strand at 402.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 399,902 + +0.1 399,903 - +0.1 399,903 - -0.2 399,920 + HEPCGN_02465 0.11 -1.0 399,984 - HEPCGN_02465 0.25 -0.0 400,020 + HEPCGN_02465 0.32 +1.4 400,149 + HEPCGN_02465 0.58 +0.6 400,175 + HEPCGN_02465 0.64 +0.3 400,328 + +0.5 400,328 + +1.2 400,351 - -0.6 400,557 + HEPCGN_02470 0.27 +0.1 400,557 + HEPCGN_02470 0.27 +1.3 400,582 - HEPCGN_02470 0.33 -0.2 400,649 - HEPCGN_02470 0.50 +0.1 400,739 - HEPCGN_02470 0.72 +1.0 400,833 - -0.1 400,846 + -0.1 400,876 - -0.5 400,879 + -0.0 400,879 + -0.2 400,880 - +0.3 400,882 + +0.6 400,884 + -0.9 401,269 + HEPCGN_02475 0.71 +0.3 401,354 - HEPCGN_02475 0.87 -2.0 401,420 + +0.2 401,581 + -2.3 401,581 + -1.4 401,582 - -0.7 401,685 - HEPCGN_02480 0.36 -0.3 401,712 + HEPCGN_02480 0.60 +0.5 401,712 + HEPCGN_02480 0.60 -0.3 401,717 + HEPCGN_02480 0.64 +2.3 401,856 - HEPCGN_02485 0.21 -0.3 401,912 - HEPCGN_02485 0.33 -0.3 402,098 - HEPCGN_02485 0.72 -0.1 402,200 + -0.6 402,200 + -0.1 402,200 + -0.4 402,201 - +0.6
Or see this region's nucleotide sequence