Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeI and dgcI are separated by 7 nucleotides dgcI and yiaG are separated by 69 nucleotides yiaG and HEPCGN_01965 overlap by 11 nucleotides
HEPCGN_01950: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 316,613 to 318,961
pdeI
HEPCGN_01955: dgcI - putative diguanylate cyclase DgcI, at 318,969 to 320,297
dgcI
HEPCGN_01960: yiaG - transcriptional regulator, at 320,367 to 320,696
yiaG
HEPCGN_01965: HEPCGN_01965 - addiction module toxin RelE, at 320,686 to 321,072
_01965
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -1
0
1 at 318.136 kb on + strand, within pdeI at 318.184 kb on - strand, within pdeI at 318.251 kb on + strand, within pdeI at 318.252 kb on - strand, within pdeI at 318.271 kb on + strand, within pdeI at 318.437 kb on - strand, within pdeI at 318.527 kb on - strand, within pdeI at 318.640 kb on + strand, within pdeI at 318.721 kb on + strand, within pdeI at 318.806 kb on + strand at 318.896 kb on + strand at 318.897 kb on - strand at 318.968 kb on + strand at 318.996 kb on - strand at 319.140 kb on - strand, within dgcI at 319.236 kb on + strand, within dgcI at 319.236 kb on + strand, within dgcI at 319.236 kb on + strand, within dgcI at 319.237 kb on - strand, within dgcI at 319.393 kb on - strand, within dgcI at 319.395 kb on + strand, within dgcI at 319.460 kb on - strand, within dgcI at 319.520 kb on + strand, within dgcI at 319.542 kb on + strand, within dgcI at 319.664 kb on + strand, within dgcI at 319.743 kb on - strand, within dgcI at 319.767 kb on - strand, within dgcI at 319.833 kb on + strand, within dgcI at 319.838 kb on + strand, within dgcI at 319.842 kb on + strand, within dgcI at 319.842 kb on + strand, within dgcI at 319.956 kb on - strand, within dgcI at 320.052 kb on - strand, within dgcI at 320.052 kb on - strand, within dgcI at 320.097 kb on + strand, within dgcI at 320.100 kb on - strand, within dgcI at 320.255 kb on + strand at 320.406 kb on - strand, within yiaG at 320.414 kb on + strand, within yiaG at 320.448 kb on - strand, within yiaG at 320.489 kb on + strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.490 kb on - strand, within yiaG at 320.746 kb on - strand, within HEPCGN_01965 at 321.022 kb on - strand, within HEPCGN_01965 at 321.062 kb on + strand at 321.062 kb on + strand at 321.063 kb on - strand at 321.072 kb on + strand at 321.073 kb on - strand at 321.073 kb on - strand at 321.229 kb on - strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.278 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 318,136 + pdeI HEPCGN_01950 0.65 -0.2 318,184 - pdeI HEPCGN_01950 0.67 -0.0 318,251 + pdeI HEPCGN_01950 0.70 +0.7 318,252 - pdeI HEPCGN_01950 0.70 +0.4 318,271 + pdeI HEPCGN_01950 0.71 +0.7 318,437 - pdeI HEPCGN_01950 0.78 +0.0 318,527 - pdeI HEPCGN_01950 0.81 -0.9 318,640 + pdeI HEPCGN_01950 0.86 -0.0 318,721 + pdeI HEPCGN_01950 0.90 -0.3 318,806 + +0.1 318,896 + -0.6 318,897 - -0.1 318,968 + -0.3 318,996 - +0.5 319,140 - dgcI HEPCGN_01955 0.13 -0.6 319,236 + dgcI HEPCGN_01955 0.20 +0.3 319,236 + dgcI HEPCGN_01955 0.20 -1.2 319,236 + dgcI HEPCGN_01955 0.20 +0.1 319,237 - dgcI HEPCGN_01955 0.20 +0.5 319,393 - dgcI HEPCGN_01955 0.32 +0.1 319,395 + dgcI HEPCGN_01955 0.32 -0.9 319,460 - dgcI HEPCGN_01955 0.37 -0.8 319,520 + dgcI HEPCGN_01955 0.41 -1.4 319,542 + dgcI HEPCGN_01955 0.43 +0.2 319,664 + dgcI HEPCGN_01955 0.52 -0.1 319,743 - dgcI HEPCGN_01955 0.58 -0.9 319,767 - dgcI HEPCGN_01955 0.60 +0.2 319,833 + dgcI HEPCGN_01955 0.65 +0.3 319,838 + dgcI HEPCGN_01955 0.65 -0.5 319,842 + dgcI HEPCGN_01955 0.66 +0.5 319,842 + dgcI HEPCGN_01955 0.66 -0.5 319,956 - dgcI HEPCGN_01955 0.74 +1.2 320,052 - dgcI HEPCGN_01955 0.81 -1.0 320,052 - dgcI HEPCGN_01955 0.81 -0.4 320,097 + dgcI HEPCGN_01955 0.85 -0.0 320,100 - dgcI HEPCGN_01955 0.85 -0.5 320,255 + +1.2 320,406 - yiaG HEPCGN_01960 0.12 +0.1 320,414 + yiaG HEPCGN_01960 0.14 -1.5 320,448 - yiaG HEPCGN_01960 0.25 +0.2 320,489 + yiaG HEPCGN_01960 0.37 -1.2 320,490 - yiaG HEPCGN_01960 0.37 +0.1 320,490 - yiaG HEPCGN_01960 0.37 -0.6 320,490 - yiaG HEPCGN_01960 0.37 -0.3 320,490 - yiaG HEPCGN_01960 0.37 -0.5 320,746 - HEPCGN_01965 0.16 -0.7 321,022 - HEPCGN_01965 0.87 -0.7 321,062 + +0.1 321,062 + -0.7 321,063 - -0.6 321,072 + -0.6 321,073 - -0.9 321,073 - +0.1 321,229 - +1.5 321,269 + +0.9 321,269 + +1.1 321,278 + -0.6
Or see this region's nucleotide sequence