Strain Fitness in Escherichia coli ECOR38 around HEPCGN_01280

Experiment: K5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K5
181,406	+	gltA	HEPCGN_01275	0.55	-0.9
181,406	+	gltA	HEPCGN_01275	0.55	+0.7
181,407	-	gltA	HEPCGN_01275	0.55	-0.0
181,452	-	gltA	HEPCGN_01275	0.58	-0.0
181,457	+	gltA	HEPCGN_01275	0.59	+1.9
181,550	+	gltA	HEPCGN_01275	0.66	-0.3
181,576	-	gltA	HEPCGN_01275	0.68	-1.5
181,668	+	gltA	HEPCGN_01275	0.75	-0.6
181,669	-	gltA	HEPCGN_01275	0.75	+0.8
181,685	+	gltA	HEPCGN_01275	0.76	-0.2
181,686	-	gltA	HEPCGN_01275	0.77	+0.4
181,686	-	gltA	HEPCGN_01275	0.77	-0.6
181,724	+	gltA	HEPCGN_01275	0.80	-0.9
181,725	-	gltA	HEPCGN_01275	0.80	+1.1
181,725	-	gltA	HEPCGN_01275	0.80	-1.9
181,743	+	gltA	HEPCGN_01275	0.81	-1.8
181,744	-	gltA	HEPCGN_01275	0.81	+0.6
181,809	+	gltA	HEPCGN_01275	0.86	-0.3
182,030	+				+0.0
182,031	-				-0.4
182,210	-	ybgU	HEPCGN_01280	0.17	+0.2
182,213	-	ybgU	HEPCGN_01280	0.19	+0.2
182,252	-	ybgU	HEPCGN_01280	0.56	-0.4
182,255	+	ybgU	HEPCGN_01280	0.58	-1.5
182,255	+	ybgU	HEPCGN_01280	0.58	-0.7
182,261	-	ybgU	HEPCGN_01280	0.64	-0.4
182,300	+				-0.1
182,301	-				+0.3
182,301	-				-0.8
182,301	-				+0.8
182,301	-				+0.1
182,424	+				+0.0
182,425	-				+0.0
182,427	-				-1.7
182,566	+				+0.3
182,567	-				+0.8
182,668	-				+2.3
182,670	+				-0.0
182,671	-				-1.6
182,739	-	sdhC	HEPCGN_01285	0.15	-1.1
182,769	-	sdhC	HEPCGN_01285	0.22	-1.0
182,910	+	sdhC	HEPCGN_01285	0.57	-0.5
182,941	+	sdhC	HEPCGN_01285	0.64	-1.2
182,942	-	sdhC	HEPCGN_01285	0.65	-0.4
182,954	+	sdhC	HEPCGN_01285	0.68	+0.7
182,958	+	sdhC	HEPCGN_01285	0.69	-0.1
182,959	-	sdhC	HEPCGN_01285	0.69	-0.8
182,959	-	sdhC	HEPCGN_01285	0.69	-0.1
183,039	+	sdhC	HEPCGN_01285	0.89	-0.9
183,043	-	sdhC	HEPCGN_01285	0.90	-0.6
183,078	-				-1.7
183,082	+				+1.2
183,116	-	sdhD	HEPCGN_01290	0.11	+0.9
183,162	+	sdhD	HEPCGN_01290	0.24	+0.0
183,163	-	sdhD	HEPCGN_01290	0.24	+0.0
183,171	+	sdhD	HEPCGN_01290	0.27	+1.4
183,172	-	sdhD	HEPCGN_01290	0.27	+1.6
183,172	-	sdhD	HEPCGN_01290	0.27	-0.5
183,172	-	sdhD	HEPCGN_01290	0.27	-0.8
183,173	+	sdhD	HEPCGN_01290	0.27	+0.2
183,173	+	sdhD	HEPCGN_01290	0.27	+1.4
183,174	-	sdhD	HEPCGN_01290	0.28	+0.5
183,210	+	sdhD	HEPCGN_01290	0.38	-0.4
183,211	-	sdhD	HEPCGN_01290	0.38	+1.0
183,279	-	sdhD	HEPCGN_01290	0.58	-2.1