Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00240 and HEPCGN_00245 are separated by 51 nucleotides HEPCGN_00245 and HEPCGN_00250 overlap by 4 nucleotides HEPCGN_00250 and HEPCGN_00255 are separated by 82 nucleotides HEPCGN_00255 and HEPCGN_00260 are separated by 576 nucleotides
HEPCGN_00240: HEPCGN_00240 - hypothetical protein, at 15,731 to 16,030
_00240
HEPCGN_00245: HEPCGN_00245 - Phage tail protein, at 16,082 to 16,456
_00245
HEPCGN_00250: HEPCGN_00250 - hypothetical protein, at 16,453 to 16,764
_00250
HEPCGN_00255: HEPCGN_00255 - hypothetical protein, at 16,847 to 16,984
_00255
HEPCGN_00260: HEPCGN_00260 - TaxA, at 17,561 to 18,064
_00260
Position (kb)
16
17 Strain fitness (log2 ratio)
-2
-1
0
1 at 16.136 kb on - strand, within HEPCGN_00245 at 16.529 kb on + strand, within HEPCGN_00250 at 16.730 kb on + strand, within HEPCGN_00250 at 16.970 kb on + strand, within HEPCGN_00255 at 17.179 kb on + strand at 17.198 kb on + strand at 17.199 kb on - strand at 17.300 kb on - strand at 17.353 kb on + strand at 17.408 kb on + strand at 17.408 kb on + strand at 17.409 kb on - strand at 17.409 kb on - strand at 17.409 kb on - strand at 17.425 kb on - strand at 17.442 kb on + strand at 17.443 kb on - strand at 17.443 kb on - strand at 17.446 kb on + strand at 17.446 kb on + strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.813 kb on - strand, within HEPCGN_00260
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 16,136 - HEPCGN_00245 0.14 -0.2 16,529 + HEPCGN_00250 0.24 -0.2 16,730 + HEPCGN_00250 0.89 -0.2 16,970 + HEPCGN_00255 0.89 +1.3 17,179 + +0.1 17,198 + -1.1 17,199 - -0.0 17,300 - -0.0 17,353 + -0.1 17,408 + -1.1 17,408 + +0.5 17,409 - -0.1 17,409 - -0.0 17,409 - +0.0 17,425 - -0.6 17,442 + -0.3 17,443 - -0.5 17,443 - -0.0 17,446 + -2.2 17,446 + +0.5 17,447 - -1.1 17,447 - +0.2 17,447 - -0.4 17,813 - HEPCGN_00260 0.50 +0.0
Or see this region's nucleotide sequence