Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00210 and HEPCGN_00215 overlap by 4 nucleotides HEPCGN_00215 and HEPCGN_00220 are separated by 639 nucleotides
HEPCGN_00210: HEPCGN_00210 - addiction module killer protein, at 12,331 to 12,666
_00210
HEPCGN_00215: HEPCGN_00215 - DNA-binding protein, at 12,663 to 13,013
_00215
HEPCGN_00220: HEPCGN_00220 - molecular chaperone DnaJ, at 13,653 to 14,168
_00220
Position (kb) 12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 11.710 kb on + strand at 11.773 kb on + strand at 11.909 kb on - strand at 12.021 kb on + strand at 12.021 kb on + strand at 12.095 kb on + strand at 12.095 kb on + strand at 12.095 kb on + strand at 12.095 kb on + strand at 12.099 kb on + strand at 12.099 kb on + strand at 12.171 kb on + strand at 12.171 kb on + strand at 12.172 kb on - strand at 12.184 kb on - strand at 12.187 kb on + strand at 12.187 kb on + strand at 12.240 kb on + strand at 12.379 kb on + strand, within HEPCGN_00210 at 12.380 kb on - strand, within HEPCGN_00210 at 12.408 kb on + strand, within HEPCGN_00210 at 12.408 kb on + strand, within HEPCGN_00210 at 12.500 kb on + strand, within HEPCGN_00210 at 12.500 kb on + strand, within HEPCGN_00210 at 12.500 kb on + strand, within HEPCGN_00210 at 12.520 kb on + strand, within HEPCGN_00210 at 12.520 kb on + strand, within HEPCGN_00210 at 12.541 kb on + strand, within HEPCGN_00210 at 12.542 kb on - strand, within HEPCGN_00210 at 12.631 kb on + strand, within HEPCGN_00210 at 12.632 kb on - strand, within HEPCGN_00210 at 12.847 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.999 kb on - strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.012 kb on - strand at 13.066 kb on + strand at 13.067 kb on - strand at 13.092 kb on + strand at 13.107 kb on - strand at 13.144 kb on - strand at 13.168 kb on + strand at 13.169 kb on - strand at 13.169 kb on - strand at 13.181 kb on + strand at 13.182 kb on - strand at 13.187 kb on + strand at 13.188 kb on - strand at 13.188 kb on - strand at 13.188 kb on - strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.198 kb on + strand at 13.198 kb on + strand at 13.198 kb on + strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.210 kb on - strand at 13.214 kb on + strand at 13.699 kb on + strand at 13.810 kb on + strand, within HEPCGN_00220 at 13.810 kb on + strand, within HEPCGN_00220 at 13.823 kb on + strand, within HEPCGN_00220 at 13.872 kb on - strand, within HEPCGN_00220 at 13.897 kb on + strand, within HEPCGN_00220
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 11,710 + -0.4 11,773 + +0.3 11,909 - -0.2 12,021 + -2.2 12,021 + -0.5 12,095 + +0.4 12,095 + -0.8 12,095 + -0.1 12,095 + -0.7 12,099 + -2.0 12,099 + +0.1 12,171 + -0.2 12,171 + -0.1 12,172 - +0.4 12,184 - +0.9 12,187 + -0.2 12,187 + -0.1 12,240 + +0.5 12,379 + HEPCGN_00210 0.14 +1.2 12,380 - HEPCGN_00210 0.15 +0.6 12,408 + HEPCGN_00210 0.23 +0.1 12,408 + HEPCGN_00210 0.23 -0.8 12,500 + HEPCGN_00210 0.50 +0.2 12,500 + HEPCGN_00210 0.50 -0.2 12,500 + HEPCGN_00210 0.50 -1.4 12,520 + HEPCGN_00210 0.56 +2.3 12,520 + HEPCGN_00210 0.56 -0.0 12,541 + HEPCGN_00210 0.62 -0.0 12,542 - HEPCGN_00210 0.63 -0.9 12,631 + HEPCGN_00210 0.89 +1.0 12,632 - HEPCGN_00210 0.90 +0.9 12,847 + HEPCGN_00215 0.52 -0.1 12,965 + HEPCGN_00215 0.86 +0.0 12,965 + HEPCGN_00215 0.86 -2.0 12,965 + HEPCGN_00215 0.86 -1.2 12,999 - -1.5 13,011 + -0.6 13,011 + -0.3 13,011 + +0.5 13,011 + +1.7 13,011 + -0.2 13,012 - -0.5 13,066 + -0.4 13,067 - +0.3 13,092 + -0.1 13,107 - -0.5 13,144 - +0.0 13,168 + -0.1 13,169 - -0.0 13,169 - +0.5 13,181 + +0.1 13,182 - +0.5 13,187 + -0.7 13,188 - -1.1 13,188 - -0.3 13,188 - -0.6 13,192 + -0.2 13,192 + -0.1 13,192 + +3.3 13,192 + +0.1 13,193 - +1.7 13,193 - -1.6 13,193 - -0.3 13,193 - +1.5 13,193 - +1.6 13,193 - +0.0 13,198 + -0.7 13,198 + -0.9 13,198 + +0.3 13,199 - -0.3 13,199 - +0.5 13,199 - +0.2 13,199 - +1.1 13,199 - +1.2 13,203 + +1.6 13,203 + -4.0 13,203 + -0.7 13,203 + +1.2 13,203 + +0.1 13,204 - +0.0 13,204 - -0.3 13,204 - -1.4 13,204 - +0.7 13,210 - +0.4 13,214 + -0.1 13,699 + -0.0 13,810 + HEPCGN_00220 0.30 -0.7 13,810 + HEPCGN_00220 0.30 -0.6 13,823 + HEPCGN_00220 0.33 +0.2 13,872 - HEPCGN_00220 0.42 +0.4 13,897 + HEPCGN_00220 0.47 +0.3
Or see this region's nucleotide sequence