Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10030 and arcA are separated by 677 nucleotides arcA and arcC are separated by 10 nucleotides arcC and argF are separated by 23 nucleotides
HEPCGN_10030: HEPCGN_10030 - YhcH/YjgK/YiaL family protein, at 751,164 to 751,616
_10030
HEPCGN_10035: arcA - arginine deiminase, at 752,294 to 753,514
arcA
HEPCGN_10040: arcC - carbamate kinase, at 753,525 to 754,457
arcC
HEPCGN_10045: argF - ornithine carbamoyltransferase, at 754,481 to 755,485
argF
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.325 kb on + strand, within HEPCGN_10030 at 751.326 kb on - strand, within HEPCGN_10030 at 751.370 kb on + strand, within HEPCGN_10030 at 751.371 kb on - strand, within HEPCGN_10030 at 751.395 kb on + strand, within HEPCGN_10030 at 751.396 kb on - strand, within HEPCGN_10030 at 751.398 kb on + strand, within HEPCGN_10030 at 751.417 kb on + strand, within HEPCGN_10030 at 751.418 kb on - strand, within HEPCGN_10030 at 751.429 kb on + strand, within HEPCGN_10030 at 751.590 kb on + strand at 751.619 kb on + strand at 751.619 kb on + strand at 751.737 kb on - strand at 751.756 kb on - strand at 751.802 kb on + strand at 751.802 kb on + strand at 751.813 kb on + strand at 751.824 kb on + strand at 751.831 kb on + strand at 751.836 kb on + strand at 751.881 kb on + strand at 751.899 kb on - strand at 751.902 kb on + strand at 751.952 kb on - strand at 751.996 kb on - strand at 752.404 kb on - strand at 752.415 kb on + strand at 752.562 kb on + strand, within arcA at 752.666 kb on + strand, within arcA at 752.759 kb on - strand, within arcA at 752.894 kb on - strand, within arcA at 752.938 kb on - strand, within arcA at 753.041 kb on - strand, within arcA at 753.098 kb on - strand, within arcA at 753.098 kb on - strand, within arcA at 753.125 kb on - strand, within arcA at 753.176 kb on - strand, within arcA at 753.221 kb on - strand, within arcA at 753.248 kb on - strand, within arcA at 753.276 kb on + strand, within arcA at 753.277 kb on - strand, within arcA at 753.282 kb on + strand, within arcA at 753.369 kb on + strand, within arcA at 753.432 kb on + strand at 753.508 kb on + strand at 753.513 kb on - strand at 753.670 kb on + strand, within arcC at 753.670 kb on + strand, within arcC at 753.726 kb on + strand, within arcC at 753.726 kb on + strand, within arcC at 753.727 kb on - strand, within arcC at 753.727 kb on - strand, within arcC at 753.789 kb on + strand, within arcC at 753.796 kb on + strand, within arcC at 753.796 kb on + strand, within arcC at 753.797 kb on - strand, within arcC at 753.797 kb on - strand, within arcC at 753.821 kb on - strand, within arcC at 753.896 kb on + strand, within arcC at 753.897 kb on - strand, within arcC at 753.900 kb on + strand, within arcC at 753.916 kb on - strand, within arcC at 753.940 kb on + strand, within arcC at 753.940 kb on + strand, within arcC at 753.940 kb on + strand, within arcC at 753.941 kb on - strand, within arcC at 753.941 kb on - strand, within arcC at 754.073 kb on - strand, within arcC at 754.073 kb on - strand, within arcC at 754.076 kb on + strand, within arcC at 754.076 kb on + strand, within arcC at 754.076 kb on + strand, within arcC at 754.077 kb on - strand, within arcC at 754.077 kb on - strand, within arcC at 754.077 kb on - strand, within arcC at 754.222 kb on + strand, within arcC at 754.222 kb on + strand, within arcC at 754.222 kb on + strand, within arcC at 754.223 kb on - strand, within arcC at 754.223 kb on - strand, within arcC at 754.223 kb on - strand, within arcC at 754.424 kb on + strand at 754.468 kb on + strand at 754.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 751,325 + HEPCGN_10030 0.36 +0.1 751,326 - HEPCGN_10030 0.36 -0.8 751,370 + HEPCGN_10030 0.45 -0.1 751,371 - HEPCGN_10030 0.46 +0.2 751,395 + HEPCGN_10030 0.51 -1.5 751,396 - HEPCGN_10030 0.51 +1.0 751,398 + HEPCGN_10030 0.52 +0.0 751,417 + HEPCGN_10030 0.56 +0.2 751,418 - HEPCGN_10030 0.56 +0.8 751,429 + HEPCGN_10030 0.58 +0.7 751,590 + -1.1 751,619 + +0.0 751,619 + +0.2 751,737 - +0.3 751,756 - -1.7 751,802 + -1.3 751,802 + -1.0 751,813 + +0.4 751,824 + -0.4 751,831 + +0.0 751,836 + -0.3 751,881 + +1.0 751,899 - +0.1 751,902 + +0.8 751,952 - +0.1 751,996 - +2.1 752,404 - +0.1 752,415 + -0.2 752,562 + arcA HEPCGN_10035 0.22 -0.5 752,666 + arcA HEPCGN_10035 0.30 +0.1 752,759 - arcA HEPCGN_10035 0.38 -0.7 752,894 - arcA HEPCGN_10035 0.49 -0.2 752,938 - arcA HEPCGN_10035 0.53 -1.0 753,041 - arcA HEPCGN_10035 0.61 +0.2 753,098 - arcA HEPCGN_10035 0.66 -0.3 753,098 - arcA HEPCGN_10035 0.66 +0.8 753,125 - arcA HEPCGN_10035 0.68 -2.1 753,176 - arcA HEPCGN_10035 0.72 +1.3 753,221 - arcA HEPCGN_10035 0.76 +0.1 753,248 - arcA HEPCGN_10035 0.78 -0.3 753,276 + arcA HEPCGN_10035 0.80 +0.3 753,277 - arcA HEPCGN_10035 0.81 -0.2 753,282 + arcA HEPCGN_10035 0.81 -0.4 753,369 + arcA HEPCGN_10035 0.88 -1.0 753,432 + +0.8 753,508 + +1.1 753,513 - +0.3 753,670 + arcC HEPCGN_10040 0.16 -0.2 753,670 + arcC HEPCGN_10040 0.16 -0.7 753,726 + arcC HEPCGN_10040 0.22 -1.3 753,726 + arcC HEPCGN_10040 0.22 +0.6 753,727 - arcC HEPCGN_10040 0.22 +0.2 753,727 - arcC HEPCGN_10040 0.22 +0.4 753,789 + arcC HEPCGN_10040 0.28 -0.7 753,796 + arcC HEPCGN_10040 0.29 -1.1 753,796 + arcC HEPCGN_10040 0.29 +0.9 753,797 - arcC HEPCGN_10040 0.29 +0.1 753,797 - arcC HEPCGN_10040 0.29 -1.0 753,821 - arcC HEPCGN_10040 0.32 -1.1 753,896 + arcC HEPCGN_10040 0.40 -0.5 753,897 - arcC HEPCGN_10040 0.40 +0.5 753,900 + arcC HEPCGN_10040 0.40 +0.1 753,916 - arcC HEPCGN_10040 0.42 +0.7 753,940 + arcC HEPCGN_10040 0.44 +0.7 753,940 + arcC HEPCGN_10040 0.44 +0.1 753,940 + arcC HEPCGN_10040 0.44 -0.3 753,941 - arcC HEPCGN_10040 0.45 -0.3 753,941 - arcC HEPCGN_10040 0.45 +0.7 754,073 - arcC HEPCGN_10040 0.59 -0.7 754,073 - arcC HEPCGN_10040 0.59 -0.3 754,076 + arcC HEPCGN_10040 0.59 -0.0 754,076 + arcC HEPCGN_10040 0.59 +0.2 754,076 + arcC HEPCGN_10040 0.59 -0.8 754,077 - arcC HEPCGN_10040 0.59 +1.5 754,077 - arcC HEPCGN_10040 0.59 +0.5 754,077 - arcC HEPCGN_10040 0.59 -0.1 754,222 + arcC HEPCGN_10040 0.75 +1.3 754,222 + arcC HEPCGN_10040 0.75 +0.3 754,222 + arcC HEPCGN_10040 0.75 -0.0 754,223 - arcC HEPCGN_10040 0.75 +0.0 754,223 - arcC HEPCGN_10040 0.75 -0.4 754,223 - arcC HEPCGN_10040 0.75 +0.3 754,424 + -0.5 754,468 + -0.3 754,486 + -1.0
Or see this region's nucleotide sequence