Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybtU and irp1 overlap by 4 nucleotides irp1 and irp2 are separated by 87 nucleotides
HEPCGN_03560: ybtU - yersiniabactin biosynthetic protein YbtU, at 619,110 to 620,210
ybtU
HEPCGN_03565: irp1 - yersiniabactin biosynthetic protein Irp1, at 620,207 to 629,698
irp1
HEPCGN_03570: irp2 - yersiniabactin non-ribosomal peptide synthetase HMWP2, at 629,786 to 635,893
irp2
Position (kb) 620
621
622
623
624
625
626
627
628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 619.246 kb on - strand, within ybtU at 619.303 kb on - strand, within ybtU at 619.303 kb on - strand, within ybtU at 619.303 kb on - strand, within ybtU at 619.450 kb on + strand, within ybtU at 619.451 kb on - strand, within ybtU at 619.545 kb on - strand, within ybtU at 619.545 kb on - strand, within ybtU at 619.714 kb on + strand, within ybtU at 619.760 kb on + strand, within ybtU at 619.994 kb on + strand, within ybtU at 619.994 kb on + strand, within ybtU at 620.037 kb on - strand, within ybtU at 620.039 kb on - strand, within ybtU at 620.132 kb on + strand at 620.146 kb on + strand at 620.178 kb on + strand at 620.210 kb on + strand at 620.210 kb on + strand at 620.210 kb on + strand at 620.255 kb on - strand at 620.441 kb on - strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.758 kb on - strand at 620.758 kb on - strand at 620.778 kb on + strand at 620.779 kb on - strand at 620.817 kb on + strand at 621.017 kb on + strand at 621.018 kb on - strand at 621.290 kb on - strand, within irp1 at 621.351 kb on - strand, within irp1 at 621.373 kb on + strand, within irp1 at 621.551 kb on + strand, within irp1 at 621.587 kb on + strand, within irp1 at 621.775 kb on - strand, within irp1 at 621.775 kb on - strand, within irp1 at 621.964 kb on - strand, within irp1 at 622.206 kb on - strand, within irp1 at 622.232 kb on + strand, within irp1 at 622.232 kb on + strand, within irp1 at 622.233 kb on - strand, within irp1 at 622.287 kb on - strand, within irp1 at 622.341 kb on - strand, within irp1 at 622.771 kb on + strand, within irp1 at 622.839 kb on - strand, within irp1 at 622.839 kb on - strand, within irp1 at 622.842 kb on + strand, within irp1 at 622.843 kb on - strand, within irp1 at 622.843 kb on - strand, within irp1 at 622.843 kb on - strand, within irp1 at 622.882 kb on + strand, within irp1 at 622.912 kb on + strand, within irp1 at 622.912 kb on + strand, within irp1 at 622.913 kb on - strand, within irp1 at 622.918 kb on + strand, within irp1 at 623.170 kb on + strand, within irp1 at 623.391 kb on + strand, within irp1 at 623.449 kb on - strand, within irp1 at 623.462 kb on - strand, within irp1 at 623.525 kb on - strand, within irp1 at 623.643 kb on + strand, within irp1 at 623.728 kb on - strand, within irp1 at 623.728 kb on - strand, within irp1 at 623.779 kb on + strand, within irp1 at 623.780 kb on - strand, within irp1 at 623.788 kb on + strand, within irp1 at 623.788 kb on + strand, within irp1 at 623.789 kb on - strand, within irp1 at 624.035 kb on - strand, within irp1 at 624.035 kb on - strand, within irp1 at 624.092 kb on + strand, within irp1 at 624.092 kb on + strand, within irp1 at 624.102 kb on + strand, within irp1 at 624.103 kb on - strand, within irp1 at 624.112 kb on + strand, within irp1 at 624.332 kb on - strand, within irp1 at 624.658 kb on + strand, within irp1 at 624.659 kb on - strand, within irp1 at 625.030 kb on + strand, within irp1 at 625.487 kb on - strand, within irp1 at 625.872 kb on - strand, within irp1 at 625.913 kb on - strand, within irp1 at 626.215 kb on - strand, within irp1 at 626.215 kb on - strand, within irp1 at 626.271 kb on + strand, within irp1 at 626.271 kb on + strand, within irp1 at 626.272 kb on - strand, within irp1 at 626.272 kb on - strand, within irp1 at 626.272 kb on - strand, within irp1 at 626.426 kb on - strand, within irp1 at 626.599 kb on - strand, within irp1 at 626.599 kb on - strand, within irp1 at 626.599 kb on - strand, within irp1 at 626.719 kb on - strand, within irp1 at 626.761 kb on + strand, within irp1 at 626.886 kb on + strand, within irp1 at 627.033 kb on + strand, within irp1 at 627.296 kb on - strand, within irp1 at 627.339 kb on + strand, within irp1 at 627.401 kb on + strand, within irp1 at 627.508 kb on - strand, within irp1 at 627.508 kb on - strand, within irp1 at 627.511 kb on + strand, within irp1 at 627.511 kb on + strand, within irp1 at 627.511 kb on + strand, within irp1 at 627.512 kb on - strand, within irp1 at 627.512 kb on - strand, within irp1 at 627.573 kb on - strand, within irp1 at 627.577 kb on + strand, within irp1 at 627.577 kb on + strand, within irp1 at 627.577 kb on + strand, within irp1 at 627.578 kb on - strand, within irp1 at 627.736 kb on + strand, within irp1 at 627.737 kb on - strand, within irp1 at 627.737 kb on - strand, within irp1 at 627.739 kb on - strand, within irp1 at 627.739 kb on - strand, within irp1 at 627.740 kb on - strand, within irp1 at 627.994 kb on - strand, within irp1 at 628.454 kb on - strand, within irp1 at 628.454 kb on - strand, within irp1 at 628.591 kb on + strand, within irp1 at 628.591 kb on + strand, within irp1 at 628.592 kb on - strand, within irp1 at 628.641 kb on + strand, within irp1 at 628.711 kb on - strand, within irp1 at 628.716 kb on - strand, within irp1 at 628.793 kb on - strand at 628.793 kb on - strand at 629.170 kb on + strand at 629.172 kb on + strand at 629.172 kb on + strand at 629.172 kb on + strand at 629.173 kb on - strand at 629.179 kb on + strand at 629.254 kb on - strand at 629.257 kb on + strand at 629.257 kb on + strand at 629.258 kb on - strand at 629.291 kb on - strand at 629.458 kb on - strand at 629.693 kb on - strand at 629.715 kb on + strand at 629.859 kb on + strand at 630.297 kb on + strand at 630.380 kb on - strand at 630.637 kb on + strand, within irp2 at 630.638 kb on - strand, within irp2 at 630.644 kb on - strand, within irp2
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 619,246 - ybtU HEPCGN_03560 0.12 -0.8 619,303 - ybtU HEPCGN_03560 0.18 -0.1 619,303 - ybtU HEPCGN_03560 0.18 -0.3 619,303 - ybtU HEPCGN_03560 0.18 +0.9 619,450 + ybtU HEPCGN_03560 0.31 -0.4 619,451 - ybtU HEPCGN_03560 0.31 -1.1 619,545 - ybtU HEPCGN_03560 0.40 +0.5 619,545 - ybtU HEPCGN_03560 0.40 +1.3 619,714 + ybtU HEPCGN_03560 0.55 +0.6 619,760 + ybtU HEPCGN_03560 0.59 +0.0 619,994 + ybtU HEPCGN_03560 0.80 +1.9 619,994 + ybtU HEPCGN_03560 0.80 +0.3 620,037 - ybtU HEPCGN_03560 0.84 +0.4 620,039 - ybtU HEPCGN_03560 0.84 -0.3 620,132 + -0.3 620,146 + -1.0 620,178 + -0.1 620,210 + -0.9 620,210 + -0.9 620,210 + +0.4 620,255 - +0.2 620,441 - -0.4 620,549 - +0.4 620,549 - -0.2 620,758 - +0.0 620,758 - -0.4 620,778 + +0.7 620,779 - +1.0 620,817 + +0.1 621,017 + +0.8 621,018 - +0.9 621,290 - irp1 HEPCGN_03565 0.11 +0.1 621,351 - irp1 HEPCGN_03565 0.12 +0.7 621,373 + irp1 HEPCGN_03565 0.12 +0.6 621,551 + irp1 HEPCGN_03565 0.14 -2.5 621,587 + irp1 HEPCGN_03565 0.15 -0.4 621,775 - irp1 HEPCGN_03565 0.17 +0.3 621,775 - irp1 HEPCGN_03565 0.17 +0.6 621,964 - irp1 HEPCGN_03565 0.19 -0.7 622,206 - irp1 HEPCGN_03565 0.21 +2.3 622,232 + irp1 HEPCGN_03565 0.21 +0.3 622,232 + irp1 HEPCGN_03565 0.21 -0.1 622,233 - irp1 HEPCGN_03565 0.21 +0.2 622,287 - irp1 HEPCGN_03565 0.22 -1.2 622,341 - irp1 HEPCGN_03565 0.22 +1.0 622,771 + irp1 HEPCGN_03565 0.27 +0.0 622,839 - irp1 HEPCGN_03565 0.28 +0.0 622,839 - irp1 HEPCGN_03565 0.28 +0.4 622,842 + irp1 HEPCGN_03565 0.28 -0.4 622,843 - irp1 HEPCGN_03565 0.28 +0.1 622,843 - irp1 HEPCGN_03565 0.28 -0.6 622,843 - irp1 HEPCGN_03565 0.28 -0.4 622,882 + irp1 HEPCGN_03565 0.28 +1.1 622,912 + irp1 HEPCGN_03565 0.28 +0.5 622,912 + irp1 HEPCGN_03565 0.28 +0.1 622,913 - irp1 HEPCGN_03565 0.29 -0.6 622,918 + irp1 HEPCGN_03565 0.29 -0.2 623,170 + irp1 HEPCGN_03565 0.31 +0.1 623,391 + irp1 HEPCGN_03565 0.34 +1.2 623,449 - irp1 HEPCGN_03565 0.34 +1.4 623,462 - irp1 HEPCGN_03565 0.34 -0.0 623,525 - irp1 HEPCGN_03565 0.35 +1.4 623,643 + irp1 HEPCGN_03565 0.36 -1.1 623,728 - irp1 HEPCGN_03565 0.37 -0.2 623,728 - irp1 HEPCGN_03565 0.37 +0.4 623,779 + irp1 HEPCGN_03565 0.38 -1.1 623,780 - irp1 HEPCGN_03565 0.38 +0.1 623,788 + irp1 HEPCGN_03565 0.38 +0.6 623,788 + irp1 HEPCGN_03565 0.38 +0.3 623,789 - irp1 HEPCGN_03565 0.38 +0.2 624,035 - irp1 HEPCGN_03565 0.40 +0.1 624,035 - irp1 HEPCGN_03565 0.40 +0.7 624,092 + irp1 HEPCGN_03565 0.41 -0.3 624,092 + irp1 HEPCGN_03565 0.41 -1.6 624,102 + irp1 HEPCGN_03565 0.41 -0.6 624,103 - irp1 HEPCGN_03565 0.41 -0.1 624,112 + irp1 HEPCGN_03565 0.41 +2.4 624,332 - irp1 HEPCGN_03565 0.43 +0.8 624,658 + irp1 HEPCGN_03565 0.47 +0.4 624,659 - irp1 HEPCGN_03565 0.47 -0.9 625,030 + irp1 HEPCGN_03565 0.51 +0.8 625,487 - irp1 HEPCGN_03565 0.56 -1.5 625,872 - irp1 HEPCGN_03565 0.60 -0.8 625,913 - irp1 HEPCGN_03565 0.60 -0.6 626,215 - irp1 HEPCGN_03565 0.63 -0.4 626,215 - irp1 HEPCGN_03565 0.63 +2.4 626,271 + irp1 HEPCGN_03565 0.64 -1.3 626,271 + irp1 HEPCGN_03565 0.64 +1.3 626,272 - irp1 HEPCGN_03565 0.64 -0.9 626,272 - irp1 HEPCGN_03565 0.64 +0.0 626,272 - irp1 HEPCGN_03565 0.64 -0.2 626,426 - irp1 HEPCGN_03565 0.66 +4.7 626,599 - irp1 HEPCGN_03565 0.67 +0.8 626,599 - irp1 HEPCGN_03565 0.67 -0.0 626,599 - irp1 HEPCGN_03565 0.67 +0.6 626,719 - irp1 HEPCGN_03565 0.69 +1.9 626,761 + irp1 HEPCGN_03565 0.69 +1.8 626,886 + irp1 HEPCGN_03565 0.70 +0.7 627,033 + irp1 HEPCGN_03565 0.72 -1.9 627,296 - irp1 HEPCGN_03565 0.75 +0.4 627,339 + irp1 HEPCGN_03565 0.75 +0.2 627,401 + irp1 HEPCGN_03565 0.76 +1.6 627,508 - irp1 HEPCGN_03565 0.77 -0.1 627,508 - irp1 HEPCGN_03565 0.77 -0.8 627,511 + irp1 HEPCGN_03565 0.77 +0.4 627,511 + irp1 HEPCGN_03565 0.77 -0.1 627,511 + irp1 HEPCGN_03565 0.77 +0.0 627,512 - irp1 HEPCGN_03565 0.77 +1.3 627,512 - irp1 HEPCGN_03565 0.77 +0.7 627,573 - irp1 HEPCGN_03565 0.78 +0.5 627,577 + irp1 HEPCGN_03565 0.78 -0.1 627,577 + irp1 HEPCGN_03565 0.78 -0.7 627,577 + irp1 HEPCGN_03565 0.78 +0.2 627,578 - irp1 HEPCGN_03565 0.78 +1.3 627,736 + irp1 HEPCGN_03565 0.79 -0.0 627,737 - irp1 HEPCGN_03565 0.79 +0.0 627,737 - irp1 HEPCGN_03565 0.79 -0.2 627,739 - irp1 HEPCGN_03565 0.79 +0.1 627,739 - irp1 HEPCGN_03565 0.79 +0.6 627,740 - irp1 HEPCGN_03565 0.79 +1.0 627,994 - irp1 HEPCGN_03565 0.82 +0.5 628,454 - irp1 HEPCGN_03565 0.87 -1.5 628,454 - irp1 HEPCGN_03565 0.87 +0.8 628,591 + irp1 HEPCGN_03565 0.88 -0.1 628,591 + irp1 HEPCGN_03565 0.88 +0.5 628,592 - irp1 HEPCGN_03565 0.88 +0.5 628,641 + irp1 HEPCGN_03565 0.89 -0.3 628,711 - irp1 HEPCGN_03565 0.90 -1.3 628,716 - irp1 HEPCGN_03565 0.90 +0.3 628,793 - -0.1 628,793 - +0.3 629,170 + +1.0 629,172 + +1.2 629,172 + +1.4 629,172 + +0.1 629,173 - -0.3 629,179 + -0.4 629,254 - +0.4 629,257 + +0.8 629,257 + +1.3 629,258 - -0.8 629,291 - +1.3 629,458 - +0.7 629,693 - -0.5 629,715 + -0.6 629,859 + +0.1 630,297 + -0.1 630,380 - -0.0 630,637 + irp2 HEPCGN_03570 0.14 -0.5 630,638 - irp2 HEPCGN_03570 0.14 -1.1 630,644 - irp2 HEPCGN_03570 0.14 -1.2
Or see this region's nucleotide sequence