Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22095

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoI and nuoJ are separated by 11 nucleotidesnuoJ and nuoK overlap by 4 nucleotidesnuoK and nuoL overlap by 4 nucleotidesnuoL and nuoM are separated by 165 nucleotides HEPCGN_22080: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 3,174,006 to 3,174,548 nuoI HEPCGN_22085: nuoJ - NADH-quinone oxidoreductase subunit J, at 3,174,560 to 3,175,114 nuoJ HEPCGN_22090: nuoK - NADH-quinone oxidoreductase subunit NuoK, at 3,175,111 to 3,175,413 nuoK HEPCGN_22095: nuoL - NADH-quinone oxidoreductase subunit L, at 3,175,410 to 3,177,251 nuoL HEPCGN_22100: nuoM - NADH-quinone oxidoreductase subunit M, at 3,177,417 to 3,178,946 nuoM Position (kb) 3175 3176 3177 3178Strain fitness (log2 ratio) -3 -2 -1 0 1at 3174.450 kb on - strand, within nuoIat 3174.470 kb on + strand, within nuoIat 3174.471 kb on - strand, within nuoIat 3174.471 kb on - strand, within nuoIat 3174.492 kb on - strand, within nuoIat 3174.575 kb on + strandat 3174.576 kb on - strandat 3174.577 kb on + strandat 3174.597 kb on + strandat 3174.598 kb on - strandat 3174.598 kb on - strandat 3174.705 kb on - strand, within nuoJat 3174.748 kb on + strand, within nuoJat 3174.938 kb on - strand, within nuoJat 3174.952 kb on + strand, within nuoJat 3174.953 kb on - strand, within nuoJat 3174.969 kb on - strand, within nuoJat 3174.973 kb on - strand, within nuoJat 3174.994 kb on + strand, within nuoJat 3174.994 kb on + strand, within nuoJat 3175.151 kb on + strand, within nuoKat 3175.264 kb on + strand, within nuoKat 3175.295 kb on - strand, within nuoKat 3175.394 kb on + strandat 3175.434 kb on - strandat 3175.522 kb on + strandat 3175.540 kb on + strandat 3175.670 kb on + strand, within nuoLat 3175.713 kb on + strand, within nuoLat 3175.713 kb on + strand, within nuoLat 3175.713 kb on + strand, within nuoLat 3175.714 kb on - strand, within nuoLat 3175.714 kb on - strand, within nuoLat 3175.714 kb on - strand, within nuoLat 3175.725 kb on + strand, within nuoLat 3175.860 kb on + strand, within nuoLat 3175.878 kb on + strand, within nuoLat 3176.309 kb on - strand, within nuoLat 3176.309 kb on - strand, within nuoLat 3176.338 kb on - strand, within nuoLat 3176.342 kb on + strand, within nuoLat 3176.342 kb on + strand, within nuoLat 3176.361 kb on + strand, within nuoLat 3176.433 kb on - strand, within nuoLat 3176.535 kb on + strand, within nuoLat 3176.643 kb on - strand, within nuoLat 3176.702 kb on + strand, within nuoLat 3176.894 kb on + strand, within nuoLat 3176.958 kb on - strand, within nuoLat 3177.015 kb on + strand, within nuoLat 3177.189 kb on + strandat 3177.190 kb on - strandat 3177.281 kb on + strandat 3177.281 kb on + strandat 3177.282 kb on - strandat 3177.282 kb on - strandat 3177.283 kb on + strandat 3177.283 kb on + strandat 3177.283 kb on + strandat 3177.283 kb on + strandat 3177.284 kb on - strandat 3177.284 kb on - strandat 3177.284 kb on - strandat 3177.284 kb on - strandat 3177.284 kb on - strandat 3177.291 kb on + strandat 3177.292 kb on - strandat 3177.292 kb on - strandat 3177.328 kb on + strandat 3177.329 kb on - strandat 3177.329 kb on - strandat 3177.397 kb on + strandat 3177.406 kb on + strandat 3177.422 kb on - strandat 3177.424 kb on + strandat 3177.437 kb on - strandat 3177.437 kb on - strandat 3177.437 kb on - strandat 3177.651 kb on - strand, within nuoMat 3178.005 kb on + strand, within nuoMat 3178.035 kb on + strand, within nuoMat 3178.036 kb on - strand, within nuoMat 3178.053 kb on - strand, within nuoMat 3178.222 kb on - strand, within nuoM

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,174,450 - nuoI HEPCGN_22080 0.82 -3.2
3,174,470 + nuoI HEPCGN_22080 0.85 -2.3
3,174,471 - nuoI HEPCGN_22080 0.86 -0.8
3,174,471 - nuoI HEPCGN_22080 0.86 -1.9
3,174,492 - nuoI HEPCGN_22080 0.90 -0.9
3,174,575 + -0.9
3,174,576 - -1.4
3,174,577 + -0.6
3,174,597 + -2.9
3,174,598 - -2.0
3,174,598 - -2.9
3,174,705 - nuoJ HEPCGN_22085 0.26 -0.2
3,174,748 + nuoJ HEPCGN_22085 0.34 -2.3
3,174,938 - nuoJ HEPCGN_22085 0.68 -1.1
3,174,952 + nuoJ HEPCGN_22085 0.71 -0.7
3,174,953 - nuoJ HEPCGN_22085 0.71 -2.0
3,174,969 - nuoJ HEPCGN_22085 0.74 +0.1
3,174,973 - nuoJ HEPCGN_22085 0.74 -1.6
3,174,994 + nuoJ HEPCGN_22085 0.78 -1.9
3,174,994 + nuoJ HEPCGN_22085 0.78 -1.4
3,175,151 + nuoK HEPCGN_22090 0.13 -0.9
3,175,264 + nuoK HEPCGN_22090 0.50 -3.1
3,175,295 - nuoK HEPCGN_22090 0.61 -0.6
3,175,394 + -1.5
3,175,434 - +0.1
3,175,522 + -2.2
3,175,540 + -2.5
3,175,670 + nuoL HEPCGN_22095 0.14 -0.0
3,175,713 + nuoL HEPCGN_22095 0.16 -2.3
3,175,713 + nuoL HEPCGN_22095 0.16 -1.3
3,175,713 + nuoL HEPCGN_22095 0.16 -1.7
3,175,714 - nuoL HEPCGN_22095 0.17 +0.6
3,175,714 - nuoL HEPCGN_22095 0.17 -1.7
3,175,714 - nuoL HEPCGN_22095 0.17 -0.7
3,175,725 + nuoL HEPCGN_22095 0.17 -1.4
3,175,860 + nuoL HEPCGN_22095 0.24 -2.8
3,175,878 + nuoL HEPCGN_22095 0.25 -0.9
3,176,309 - nuoL HEPCGN_22095 0.49 -1.1
3,176,309 - nuoL HEPCGN_22095 0.49 -1.8
3,176,338 - nuoL HEPCGN_22095 0.50 -2.7
3,176,342 + nuoL HEPCGN_22095 0.51 -2.3
3,176,342 + nuoL HEPCGN_22095 0.51 -2.6
3,176,361 + nuoL HEPCGN_22095 0.52 -2.5
3,176,433 - nuoL HEPCGN_22095 0.56 -1.5
3,176,535 + nuoL HEPCGN_22095 0.61 -2.4
3,176,643 - nuoL HEPCGN_22095 0.67 +0.1
3,176,702 + nuoL HEPCGN_22095 0.70 +1.1
3,176,894 + nuoL HEPCGN_22095 0.81 +0.6
3,176,958 - nuoL HEPCGN_22095 0.84 -1.6
3,177,015 + nuoL HEPCGN_22095 0.87 -3.4
3,177,189 + -1.7
3,177,190 - -1.1
3,177,281 + +0.1
3,177,281 + -0.5
3,177,282 - -1.6
3,177,282 - -0.4
3,177,283 + -0.1
3,177,283 + -1.7
3,177,283 + -2.8
3,177,283 + -0.3
3,177,284 - +0.1
3,177,284 - -2.1
3,177,284 - -1.4
3,177,284 - -1.0
3,177,284 - -1.5
3,177,291 + -1.4
3,177,292 - -1.3
3,177,292 - -1.3
3,177,328 + -0.9
3,177,329 - -2.4
3,177,329 - -0.9
3,177,397 + -2.1
3,177,406 + +0.1
3,177,422 - -0.2
3,177,424 + +0.4
3,177,437 - -1.5
3,177,437 - -2.0
3,177,437 - -3.0
3,177,651 - nuoM HEPCGN_22100 0.15 -1.1
3,178,005 + nuoM HEPCGN_22100 0.38 -2.1
3,178,035 + nuoM HEPCGN_22100 0.40 -3.6
3,178,036 - nuoM HEPCGN_22100 0.40 -1.6
3,178,053 - nuoM HEPCGN_22100 0.42 -0.4
3,178,222 - nuoM HEPCGN_22100 0.53 -2.0

Or see this region's nucleotide sequence