Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoI and nuoJ are separated by 11 nucleotides nuoJ and nuoK overlap by 4 nucleotides nuoK and nuoL overlap by 4 nucleotides nuoL and nuoM are separated by 165 nucleotides
HEPCGN_22080: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 3,174,006 to 3,174,548
nuoI
HEPCGN_22085: nuoJ - NADH-quinone oxidoreductase subunit J, at 3,174,560 to 3,175,114
nuoJ
HEPCGN_22090: nuoK - NADH-quinone oxidoreductase subunit NuoK, at 3,175,111 to 3,175,413
nuoK
HEPCGN_22095: nuoL - NADH-quinone oxidoreductase subunit L, at 3,175,410 to 3,177,251
nuoL
HEPCGN_22100: nuoM - NADH-quinone oxidoreductase subunit M, at 3,177,417 to 3,178,946
nuoM
Position (kb)
3175
3176
3177
3178 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3174.450 kb on - strand, within nuoI at 3174.470 kb on + strand, within nuoI at 3174.471 kb on - strand, within nuoI at 3174.471 kb on - strand, within nuoI at 3174.492 kb on - strand, within nuoI at 3174.575 kb on + strand at 3174.576 kb on - strand at 3174.577 kb on + strand at 3174.597 kb on + strand at 3174.598 kb on - strand at 3174.598 kb on - strand at 3174.705 kb on - strand, within nuoJ at 3174.748 kb on + strand, within nuoJ at 3174.938 kb on - strand, within nuoJ at 3174.952 kb on + strand, within nuoJ at 3174.953 kb on - strand, within nuoJ at 3174.969 kb on - strand, within nuoJ at 3174.973 kb on - strand, within nuoJ at 3174.994 kb on + strand, within nuoJ at 3174.994 kb on + strand, within nuoJ at 3175.151 kb on + strand, within nuoK at 3175.264 kb on + strand, within nuoK at 3175.295 kb on - strand, within nuoK at 3175.394 kb on + strand at 3175.434 kb on - strand at 3175.522 kb on + strand at 3175.540 kb on + strand at 3175.670 kb on + strand, within nuoL at 3175.713 kb on + strand, within nuoL at 3175.713 kb on + strand, within nuoL at 3175.713 kb on + strand, within nuoL at 3175.714 kb on - strand, within nuoL at 3175.714 kb on - strand, within nuoL at 3175.714 kb on - strand, within nuoL at 3175.725 kb on + strand, within nuoL at 3175.860 kb on + strand, within nuoL at 3175.878 kb on + strand, within nuoL at 3176.309 kb on - strand, within nuoL at 3176.309 kb on - strand, within nuoL at 3176.338 kb on - strand, within nuoL at 3176.342 kb on + strand, within nuoL at 3176.342 kb on + strand, within nuoL at 3176.361 kb on + strand, within nuoL at 3176.433 kb on - strand, within nuoL at 3176.535 kb on + strand, within nuoL at 3176.643 kb on - strand, within nuoL at 3176.702 kb on + strand, within nuoL at 3176.894 kb on + strand, within nuoL at 3176.958 kb on - strand, within nuoL at 3177.015 kb on + strand, within nuoL at 3177.189 kb on + strand at 3177.190 kb on - strand at 3177.281 kb on + strand at 3177.281 kb on + strand at 3177.282 kb on - strand at 3177.282 kb on - strand at 3177.283 kb on + strand at 3177.283 kb on + strand at 3177.283 kb on + strand at 3177.283 kb on + strand at 3177.284 kb on - strand at 3177.284 kb on - strand at 3177.284 kb on - strand at 3177.284 kb on - strand at 3177.284 kb on - strand at 3177.291 kb on + strand at 3177.292 kb on - strand at 3177.292 kb on - strand at 3177.328 kb on + strand at 3177.329 kb on - strand at 3177.329 kb on - strand at 3177.397 kb on + strand at 3177.406 kb on + strand at 3177.422 kb on - strand at 3177.424 kb on + strand at 3177.437 kb on - strand at 3177.437 kb on - strand at 3177.437 kb on - strand at 3177.651 kb on - strand, within nuoM at 3178.005 kb on + strand, within nuoM at 3178.035 kb on + strand, within nuoM at 3178.036 kb on - strand, within nuoM at 3178.053 kb on - strand, within nuoM at 3178.222 kb on - strand, within nuoM
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,174,450 - nuoI HEPCGN_22080 0.82 -3.2 3,174,470 + nuoI HEPCGN_22080 0.85 -2.3 3,174,471 - nuoI HEPCGN_22080 0.86 -0.8 3,174,471 - nuoI HEPCGN_22080 0.86 -1.9 3,174,492 - nuoI HEPCGN_22080 0.90 -0.9 3,174,575 + -0.9 3,174,576 - -1.4 3,174,577 + -0.6 3,174,597 + -2.9 3,174,598 - -2.0 3,174,598 - -2.9 3,174,705 - nuoJ HEPCGN_22085 0.26 -0.2 3,174,748 + nuoJ HEPCGN_22085 0.34 -2.3 3,174,938 - nuoJ HEPCGN_22085 0.68 -1.1 3,174,952 + nuoJ HEPCGN_22085 0.71 -0.7 3,174,953 - nuoJ HEPCGN_22085 0.71 -2.0 3,174,969 - nuoJ HEPCGN_22085 0.74 +0.1 3,174,973 - nuoJ HEPCGN_22085 0.74 -1.6 3,174,994 + nuoJ HEPCGN_22085 0.78 -1.9 3,174,994 + nuoJ HEPCGN_22085 0.78 -1.4 3,175,151 + nuoK HEPCGN_22090 0.13 -0.9 3,175,264 + nuoK HEPCGN_22090 0.50 -3.1 3,175,295 - nuoK HEPCGN_22090 0.61 -0.6 3,175,394 + -1.5 3,175,434 - +0.1 3,175,522 + -2.2 3,175,540 + -2.5 3,175,670 + nuoL HEPCGN_22095 0.14 -0.0 3,175,713 + nuoL HEPCGN_22095 0.16 -2.3 3,175,713 + nuoL HEPCGN_22095 0.16 -1.3 3,175,713 + nuoL HEPCGN_22095 0.16 -1.7 3,175,714 - nuoL HEPCGN_22095 0.17 +0.6 3,175,714 - nuoL HEPCGN_22095 0.17 -1.7 3,175,714 - nuoL HEPCGN_22095 0.17 -0.7 3,175,725 + nuoL HEPCGN_22095 0.17 -1.4 3,175,860 + nuoL HEPCGN_22095 0.24 -2.8 3,175,878 + nuoL HEPCGN_22095 0.25 -0.9 3,176,309 - nuoL HEPCGN_22095 0.49 -1.1 3,176,309 - nuoL HEPCGN_22095 0.49 -1.8 3,176,338 - nuoL HEPCGN_22095 0.50 -2.7 3,176,342 + nuoL HEPCGN_22095 0.51 -2.3 3,176,342 + nuoL HEPCGN_22095 0.51 -2.6 3,176,361 + nuoL HEPCGN_22095 0.52 -2.5 3,176,433 - nuoL HEPCGN_22095 0.56 -1.5 3,176,535 + nuoL HEPCGN_22095 0.61 -2.4 3,176,643 - nuoL HEPCGN_22095 0.67 +0.1 3,176,702 + nuoL HEPCGN_22095 0.70 +1.1 3,176,894 + nuoL HEPCGN_22095 0.81 +0.6 3,176,958 - nuoL HEPCGN_22095 0.84 -1.6 3,177,015 + nuoL HEPCGN_22095 0.87 -3.4 3,177,189 + -1.7 3,177,190 - -1.1 3,177,281 + +0.1 3,177,281 + -0.5 3,177,282 - -1.6 3,177,282 - -0.4 3,177,283 + -0.1 3,177,283 + -1.7 3,177,283 + -2.8 3,177,283 + -0.3 3,177,284 - +0.1 3,177,284 - -2.1 3,177,284 - -1.4 3,177,284 - -1.0 3,177,284 - -1.5 3,177,291 + -1.4 3,177,292 - -1.3 3,177,292 - -1.3 3,177,328 + -0.9 3,177,329 - -2.4 3,177,329 - -0.9 3,177,397 + -2.1 3,177,406 + +0.1 3,177,422 - -0.2 3,177,424 + +0.4 3,177,437 - -1.5 3,177,437 - -2.0 3,177,437 - -3.0 3,177,651 - nuoM HEPCGN_22100 0.15 -1.1 3,178,005 + nuoM HEPCGN_22100 0.38 -2.1 3,178,035 + nuoM HEPCGN_22100 0.40 -3.6 3,178,036 - nuoM HEPCGN_22100 0.40 -1.6 3,178,053 - nuoM HEPCGN_22100 0.42 -0.4 3,178,222 - nuoM HEPCGN_22100 0.53 -2.0
Or see this region's nucleotide sequence