Strain Fitness in Escherichia coli ECOR38 around HEPCGN_21790

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_21775 and HEPCGN_21780 are separated by 16 nucleotidesHEPCGN_21780 and HEPCGN_21785 overlap by 4 nucleotidesHEPCGN_21785 and HEPCGN_21790 overlap by 4 nucleotidesHEPCGN_21790 and HEPCGN_21795 are separated by 1 nucleotidesHEPCGN_21795 and HEPCGN_21800 are separated by 48 nucleotides HEPCGN_21775: HEPCGN_21775 - fimbrial protein StfD, at 3,113,251 to 3,114,003 _21775 HEPCGN_21780: HEPCGN_21780 - Fimbrial domain-containing protein, at 3,114,020 to 3,114,523 _21780 HEPCGN_21785: HEPCGN_21785 - fimbrial protein, at 3,114,520 to 3,114,999 _21785 HEPCGN_21790: HEPCGN_21790 - fimbrial protein, at 3,114,996 to 3,115,526 _21790 HEPCGN_21795: HEPCGN_21795 - adhesin, at 3,115,528 to 3,116,373 _21795 HEPCGN_21800: HEPCGN_21800 - hypothetical protein, at 3,116,422 to 3,117,045 _21800 Position (kb) 3114 3115 3116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3114.194 kb on - strand, within HEPCGN_21780at 3114.398 kb on - strand, within HEPCGN_21780at 3114.503 kb on - strandat 3114.503 kb on - strandat 3114.542 kb on + strandat 3114.542 kb on + strandat 3114.542 kb on + strandat 3114.543 kb on - strandat 3114.543 kb on - strandat 3114.543 kb on - strandat 3114.715 kb on + strand, within HEPCGN_21785at 3114.716 kb on - strand, within HEPCGN_21785at 3114.716 kb on - strand, within HEPCGN_21785at 3114.716 kb on - strand, within HEPCGN_21785at 3114.864 kb on + strand, within HEPCGN_21785at 3114.927 kb on - strand, within HEPCGN_21785at 3115.107 kb on - strand, within HEPCGN_21790at 3115.107 kb on - strand, within HEPCGN_21790at 3115.439 kb on + strand, within HEPCGN_21790at 3115.519 kb on - strandat 3115.618 kb on - strand, within HEPCGN_21795at 3115.618 kb on - strand, within HEPCGN_21795at 3115.639 kb on + strand, within HEPCGN_21795at 3115.689 kb on + strand, within HEPCGN_21795at 3115.689 kb on + strand, within HEPCGN_21795at 3115.690 kb on - strand, within HEPCGN_21795at 3115.703 kb on - strand, within HEPCGN_21795at 3115.703 kb on - strand, within HEPCGN_21795at 3115.704 kb on + strand, within HEPCGN_21795at 3115.704 kb on + strand, within HEPCGN_21795at 3115.705 kb on - strand, within HEPCGN_21795at 3115.750 kb on - strand, within HEPCGN_21795at 3115.838 kb on - strand, within HEPCGN_21795at 3115.838 kb on - strand, within HEPCGN_21795at 3115.873 kb on + strand, within HEPCGN_21795at 3115.878 kb on + strand, within HEPCGN_21795at 3115.894 kb on + strand, within HEPCGN_21795at 3115.897 kb on + strand, within HEPCGN_21795at 3115.897 kb on + strand, within HEPCGN_21795at 3115.939 kb on + strand, within HEPCGN_21795at 3115.939 kb on + strand, within HEPCGN_21795at 3115.940 kb on - strand, within HEPCGN_21795at 3115.940 kb on - strand, within HEPCGN_21795at 3115.940 kb on - strand, within HEPCGN_21795at 3115.940 kb on - strand, within HEPCGN_21795at 3115.942 kb on - strand, within HEPCGN_21795at 3115.942 kb on - strand, within HEPCGN_21795at 3115.981 kb on + strand, within HEPCGN_21795at 3115.981 kb on + strand, within HEPCGN_21795at 3115.981 kb on + strand, within HEPCGN_21795at 3115.982 kb on - strand, within HEPCGN_21795at 3116.033 kb on - strand, within HEPCGN_21795at 3116.033 kb on - strand, within HEPCGN_21795at 3116.033 kb on - strand, within HEPCGN_21795at 3116.033 kb on - strand, within HEPCGN_21795at 3116.037 kb on + strand, within HEPCGN_21795at 3116.037 kb on + strand, within HEPCGN_21795at 3116.038 kb on - strand, within HEPCGN_21795at 3116.038 kb on - strand, within HEPCGN_21795at 3116.038 kb on - strand, within HEPCGN_21795at 3116.038 kb on - strand, within HEPCGN_21795at 3116.056 kb on + strand, within HEPCGN_21795at 3116.067 kb on + strand, within HEPCGN_21795at 3116.183 kb on - strand, within HEPCGN_21795at 3116.183 kb on - strand, within HEPCGN_21795at 3116.183 kb on - strand, within HEPCGN_21795at 3116.353 kb on + strandat 3116.377 kb on - strandat 3116.378 kb on + strandat 3116.378 kb on + strandat 3116.379 kb on - strandat 3116.500 kb on + strand, within HEPCGN_21800

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,114,194 - HEPCGN_21780 0.35 -1.4
3,114,398 - HEPCGN_21780 0.75 +0.1
3,114,503 - +0.6
3,114,503 - -0.3
3,114,542 + +0.2
3,114,542 + -0.5
3,114,542 + -0.6
3,114,543 - +0.5
3,114,543 - -0.2
3,114,543 - -0.4
3,114,715 + HEPCGN_21785 0.41 +0.2
3,114,716 - HEPCGN_21785 0.41 +0.4
3,114,716 - HEPCGN_21785 0.41 -0.1
3,114,716 - HEPCGN_21785 0.41 +0.7
3,114,864 + HEPCGN_21785 0.72 +0.0
3,114,927 - HEPCGN_21785 0.85 -0.3
3,115,107 - HEPCGN_21790 0.21 -0.3
3,115,107 - HEPCGN_21790 0.21 -3.0
3,115,439 + HEPCGN_21790 0.83 -1.2
3,115,519 - +0.0
3,115,618 - HEPCGN_21795 0.11 -0.2
3,115,618 - HEPCGN_21795 0.11 +0.1
3,115,639 + HEPCGN_21795 0.13 +0.1
3,115,689 + HEPCGN_21795 0.19 -0.2
3,115,689 + HEPCGN_21795 0.19 -0.0
3,115,690 - HEPCGN_21795 0.19 +0.6
3,115,703 - HEPCGN_21795 0.21 +0.3
3,115,703 - HEPCGN_21795 0.21 +0.0
3,115,704 + HEPCGN_21795 0.21 -0.1
3,115,704 + HEPCGN_21795 0.21 +1.5
3,115,705 - HEPCGN_21795 0.21 -0.6
3,115,750 - HEPCGN_21795 0.26 -0.3
3,115,838 - HEPCGN_21795 0.37 +0.4
3,115,838 - HEPCGN_21795 0.37 -0.3
3,115,873 + HEPCGN_21795 0.41 -0.6
3,115,878 + HEPCGN_21795 0.41 -0.6
3,115,894 + HEPCGN_21795 0.43 -1.6
3,115,897 + HEPCGN_21795 0.44 -1.0
3,115,897 + HEPCGN_21795 0.44 -0.1
3,115,939 + HEPCGN_21795 0.49 +0.1
3,115,939 + HEPCGN_21795 0.49 +1.9
3,115,940 - HEPCGN_21795 0.49 -1.0
3,115,940 - HEPCGN_21795 0.49 +0.4
3,115,940 - HEPCGN_21795 0.49 +0.0
3,115,940 - HEPCGN_21795 0.49 -0.2
3,115,942 - HEPCGN_21795 0.49 +1.1
3,115,942 - HEPCGN_21795 0.49 +0.2
3,115,981 + HEPCGN_21795 0.54 +1.4
3,115,981 + HEPCGN_21795 0.54 +0.2
3,115,981 + HEPCGN_21795 0.54 -0.8
3,115,982 - HEPCGN_21795 0.54 -0.9
3,116,033 - HEPCGN_21795 0.60 -1.2
3,116,033 - HEPCGN_21795 0.60 +0.0
3,116,033 - HEPCGN_21795 0.60 -0.8
3,116,033 - HEPCGN_21795 0.60 +0.4
3,116,037 + HEPCGN_21795 0.60 +0.8
3,116,037 + HEPCGN_21795 0.60 +0.1
3,116,038 - HEPCGN_21795 0.60 -2.0
3,116,038 - HEPCGN_21795 0.60 -0.9
3,116,038 - HEPCGN_21795 0.60 +0.8
3,116,038 - HEPCGN_21795 0.60 +0.4
3,116,056 + HEPCGN_21795 0.62 -0.4
3,116,067 + HEPCGN_21795 0.64 -0.8
3,116,183 - HEPCGN_21795 0.77 +0.2
3,116,183 - HEPCGN_21795 0.77 +0.6
3,116,183 - HEPCGN_21795 0.77 -0.2
3,116,353 + +0.3
3,116,377 - +0.7
3,116,378 + +0.2
3,116,378 + -0.0
3,116,379 - +2.7
3,116,500 + HEPCGN_21800 0.12 +0.3

Or see this region's nucleotide sequence