Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amiA and ypeA are separated by 213 nucleotides ypeA and yfeZ overlap by 14 nucleotides yfeZ and yfeY are separated by 60 nucleotides yfeY and yfeX are separated by 95 nucleotides
HEPCGN_21275: amiA - N-acetylmuramoyl-L-alanine amidase AmiA, at 3,008,704 to 3,009,573
amiA
HEPCGN_21280: ypeA - GNAT family acetyltransferase, at 3,009,787 to 3,010,212
ypeA
HEPCGN_21285: yfeZ - Inner membrane protein YfeZ, at 3,010,199 to 3,010,648
yfeZ
HEPCGN_21290: yfeY - RpoE-regulated lipoprotein, at 3,010,709 to 3,011,284
yfeY
HEPCGN_21295: yfeX - porphyrinogen peroxidase, at 3,011,380 to 3,012,279
yfeX
Position (kb)
3010
3011 Strain fitness (log2 ratio)
-2
-1
0
1 at 3009.230 kb on + strand, within amiA at 3009.231 kb on - strand, within amiA at 3009.233 kb on - strand, within amiA at 3009.241 kb on - strand, within amiA at 3009.310 kb on - strand, within amiA at 3009.553 kb on + strand at 3009.562 kb on - strand at 3009.587 kb on + strand at 3009.593 kb on + strand at 3009.608 kb on + strand at 3009.609 kb on - strand at 3009.609 kb on - strand at 3009.611 kb on - strand at 3009.658 kb on + strand at 3009.729 kb on + strand at 3009.750 kb on - strand at 3009.794 kb on + strand at 3009.794 kb on + strand at 3009.894 kb on + strand, within ypeA at 3009.895 kb on - strand, within ypeA at 3009.895 kb on - strand, within ypeA at 3009.994 kb on + strand, within ypeA at 3009.997 kb on + strand, within ypeA at 3009.997 kb on + strand, within ypeA at 3010.039 kb on - strand, within ypeA at 3010.116 kb on + strand, within ypeA at 3010.139 kb on - strand, within ypeA at 3010.139 kb on - strand, within ypeA at 3010.139 kb on - strand, within ypeA at 3010.207 kb on + strand at 3010.229 kb on + strand at 3010.229 kb on + strand at 3010.279 kb on - strand, within yfeZ at 3010.780 kb on + strand, within yfeY at 3010.780 kb on + strand, within yfeY at 3010.781 kb on - strand, within yfeY at 3010.855 kb on - strand, within yfeY at 3011.015 kb on - strand, within yfeY at 3011.158 kb on + strand, within yfeY at 3011.179 kb on + strand, within yfeY at 3011.179 kb on + strand, within yfeY at 3011.179 kb on + strand, within yfeY at 3011.179 kb on + strand, within yfeY at 3011.180 kb on - strand, within yfeY at 3011.180 kb on - strand, within yfeY at 3011.180 kb on - strand, within yfeY at 3011.180 kb on - strand, within yfeY at 3011.182 kb on + strand, within yfeY at 3011.182 kb on + strand, within yfeY at 3011.322 kb on + strand at 3011.323 kb on - strand at 3011.646 kb on + strand, within yfeX at 3011.646 kb on + strand, within yfeX
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,009,230 + amiA HEPCGN_21275 0.60 +0.9 3,009,231 - amiA HEPCGN_21275 0.61 -0.0 3,009,233 - amiA HEPCGN_21275 0.61 +0.8 3,009,241 - amiA HEPCGN_21275 0.62 +0.4 3,009,310 - amiA HEPCGN_21275 0.70 +0.2 3,009,553 + +0.0 3,009,562 - +0.3 3,009,587 + +0.8 3,009,593 + -0.4 3,009,608 + -1.0 3,009,609 - +1.0 3,009,609 - +0.3 3,009,611 - -0.2 3,009,658 + -0.0 3,009,729 + -0.4 3,009,750 - -0.9 3,009,794 + +0.3 3,009,794 + -0.4 3,009,894 + ypeA HEPCGN_21280 0.25 -0.3 3,009,895 - ypeA HEPCGN_21280 0.25 -1.6 3,009,895 - ypeA HEPCGN_21280 0.25 -1.1 3,009,994 + ypeA HEPCGN_21280 0.49 +1.0 3,009,997 + ypeA HEPCGN_21280 0.49 -0.4 3,009,997 + ypeA HEPCGN_21280 0.49 +0.3 3,010,039 - ypeA HEPCGN_21280 0.59 -1.7 3,010,116 + ypeA HEPCGN_21280 0.77 +0.5 3,010,139 - ypeA HEPCGN_21280 0.83 +0.4 3,010,139 - ypeA HEPCGN_21280 0.83 +0.1 3,010,139 - ypeA HEPCGN_21280 0.83 -2.4 3,010,207 + +0.7 3,010,229 + +1.2 3,010,229 + -1.0 3,010,279 - yfeZ HEPCGN_21285 0.18 -1.2 3,010,780 + yfeY HEPCGN_21290 0.12 +0.3 3,010,780 + yfeY HEPCGN_21290 0.12 +0.4 3,010,781 - yfeY HEPCGN_21290 0.12 -0.2 3,010,855 - yfeY HEPCGN_21290 0.25 -1.2 3,011,015 - yfeY HEPCGN_21290 0.53 -0.2 3,011,158 + yfeY HEPCGN_21290 0.78 +0.2 3,011,179 + yfeY HEPCGN_21290 0.82 +0.5 3,011,179 + yfeY HEPCGN_21290 0.82 -1.4 3,011,179 + yfeY HEPCGN_21290 0.82 -0.2 3,011,179 + yfeY HEPCGN_21290 0.82 +0.2 3,011,180 - yfeY HEPCGN_21290 0.82 -0.7 3,011,180 - yfeY HEPCGN_21290 0.82 +0.1 3,011,180 - yfeY HEPCGN_21290 0.82 -0.3 3,011,180 - yfeY HEPCGN_21290 0.82 -0.1 3,011,182 + yfeY HEPCGN_21290 0.82 -0.2 3,011,182 + yfeY HEPCGN_21290 0.82 +1.0 3,011,322 + +0.1 3,011,323 - +0.3 3,011,646 + yfeX HEPCGN_21295 0.30 -0.4 3,011,646 + yfeX HEPCGN_21295 0.30 -0.4
Or see this region's nucleotide sequence