Strain Fitness in Escherichia coli ECOR38 around HEPCGN_21285

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntamiA and ypeA are separated by 213 nucleotidesypeA and yfeZ overlap by 14 nucleotidesyfeZ and yfeY are separated by 60 nucleotidesyfeY and yfeX are separated by 95 nucleotides HEPCGN_21275: amiA - N-acetylmuramoyl-L-alanine amidase AmiA, at 3,008,704 to 3,009,573 amiA HEPCGN_21280: ypeA - GNAT family acetyltransferase, at 3,009,787 to 3,010,212 ypeA HEPCGN_21285: yfeZ - Inner membrane protein YfeZ, at 3,010,199 to 3,010,648 yfeZ HEPCGN_21290: yfeY - RpoE-regulated lipoprotein, at 3,010,709 to 3,011,284 yfeY HEPCGN_21295: yfeX - porphyrinogen peroxidase, at 3,011,380 to 3,012,279 yfeX Position (kb) 3010 3011Strain fitness (log2 ratio) -2 -1 0 1at 3009.230 kb on + strand, within amiAat 3009.231 kb on - strand, within amiAat 3009.233 kb on - strand, within amiAat 3009.241 kb on - strand, within amiAat 3009.310 kb on - strand, within amiAat 3009.553 kb on + strandat 3009.562 kb on - strandat 3009.587 kb on + strandat 3009.593 kb on + strandat 3009.608 kb on + strandat 3009.609 kb on - strandat 3009.609 kb on - strandat 3009.611 kb on - strandat 3009.658 kb on + strandat 3009.729 kb on + strandat 3009.750 kb on - strandat 3009.794 kb on + strandat 3009.794 kb on + strandat 3009.894 kb on + strand, within ypeAat 3009.895 kb on - strand, within ypeAat 3009.895 kb on - strand, within ypeAat 3009.994 kb on + strand, within ypeAat 3009.997 kb on + strand, within ypeAat 3009.997 kb on + strand, within ypeAat 3010.039 kb on - strand, within ypeAat 3010.116 kb on + strand, within ypeAat 3010.139 kb on - strand, within ypeAat 3010.139 kb on - strand, within ypeAat 3010.139 kb on - strand, within ypeAat 3010.207 kb on + strandat 3010.229 kb on + strandat 3010.229 kb on + strandat 3010.279 kb on - strand, within yfeZat 3010.780 kb on + strand, within yfeYat 3010.780 kb on + strand, within yfeYat 3010.781 kb on - strand, within yfeYat 3010.855 kb on - strand, within yfeYat 3011.015 kb on - strand, within yfeYat 3011.158 kb on + strand, within yfeYat 3011.179 kb on + strand, within yfeYat 3011.179 kb on + strand, within yfeYat 3011.179 kb on + strand, within yfeYat 3011.179 kb on + strand, within yfeYat 3011.180 kb on - strand, within yfeYat 3011.180 kb on - strand, within yfeYat 3011.180 kb on - strand, within yfeYat 3011.180 kb on - strand, within yfeYat 3011.182 kb on + strand, within yfeYat 3011.182 kb on + strand, within yfeYat 3011.322 kb on + strandat 3011.323 kb on - strandat 3011.646 kb on + strand, within yfeXat 3011.646 kb on + strand, within yfeX

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,009,230 + amiA HEPCGN_21275 0.60 +0.9
3,009,231 - amiA HEPCGN_21275 0.61 -0.0
3,009,233 - amiA HEPCGN_21275 0.61 +0.8
3,009,241 - amiA HEPCGN_21275 0.62 +0.4
3,009,310 - amiA HEPCGN_21275 0.70 +0.2
3,009,553 + +0.0
3,009,562 - +0.3
3,009,587 + +0.8
3,009,593 + -0.4
3,009,608 + -1.0
3,009,609 - +1.0
3,009,609 - +0.3
3,009,611 - -0.2
3,009,658 + -0.0
3,009,729 + -0.4
3,009,750 - -0.9
3,009,794 + +0.3
3,009,794 + -0.4
3,009,894 + ypeA HEPCGN_21280 0.25 -0.3
3,009,895 - ypeA HEPCGN_21280 0.25 -1.6
3,009,895 - ypeA HEPCGN_21280 0.25 -1.1
3,009,994 + ypeA HEPCGN_21280 0.49 +1.0
3,009,997 + ypeA HEPCGN_21280 0.49 -0.4
3,009,997 + ypeA HEPCGN_21280 0.49 +0.3
3,010,039 - ypeA HEPCGN_21280 0.59 -1.7
3,010,116 + ypeA HEPCGN_21280 0.77 +0.5
3,010,139 - ypeA HEPCGN_21280 0.83 +0.4
3,010,139 - ypeA HEPCGN_21280 0.83 +0.1
3,010,139 - ypeA HEPCGN_21280 0.83 -2.4
3,010,207 + +0.7
3,010,229 + +1.2
3,010,229 + -1.0
3,010,279 - yfeZ HEPCGN_21285 0.18 -1.2
3,010,780 + yfeY HEPCGN_21290 0.12 +0.3
3,010,780 + yfeY HEPCGN_21290 0.12 +0.4
3,010,781 - yfeY HEPCGN_21290 0.12 -0.2
3,010,855 - yfeY HEPCGN_21290 0.25 -1.2
3,011,015 - yfeY HEPCGN_21290 0.53 -0.2
3,011,158 + yfeY HEPCGN_21290 0.78 +0.2
3,011,179 + yfeY HEPCGN_21290 0.82 +0.5
3,011,179 + yfeY HEPCGN_21290 0.82 -1.4
3,011,179 + yfeY HEPCGN_21290 0.82 -0.2
3,011,179 + yfeY HEPCGN_21290 0.82 +0.2
3,011,180 - yfeY HEPCGN_21290 0.82 -0.7
3,011,180 - yfeY HEPCGN_21290 0.82 +0.1
3,011,180 - yfeY HEPCGN_21290 0.82 -0.3
3,011,180 - yfeY HEPCGN_21290 0.82 -0.1
3,011,182 + yfeY HEPCGN_21290 0.82 -0.2
3,011,182 + yfeY HEPCGN_21290 0.82 +1.0
3,011,322 + +0.1
3,011,323 - +0.3
3,011,646 + yfeX HEPCGN_21295 0.30 -0.4
3,011,646 + yfeX HEPCGN_21295 0.30 -0.4

Or see this region's nucleotide sequence