Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20585

Experiment: K25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K25
2,853,221	+	pdxJ	HEPCGN_20570	0.80	+0.7
2,853,238	+	pdxJ	HEPCGN_20570	0.83	-1.8
2,853,238	+	pdxJ	HEPCGN_20570	0.83	+0.4
2,853,238	+	pdxJ	HEPCGN_20570	0.83	-0.7
2,853,286	+	pdxJ	HEPCGN_20570	0.89	-0.8
2,853,966	-				-0.3
2,853,969	+				+0.0
2,854,011	+				+2.0
2,854,120	+				+1.4
2,854,121	-				+0.7
2,854,121	-				-0.5
2,854,121	-				-0.6
2,854,128	-				+0.7
2,854,190	-	shoB	HEPCGN_20585	0.30	-1.1
2,854,301	+				-0.8
2,854,301	+				+0.2
2,854,308	-				-0.5
2,854,332	+				+0.5
2,854,335	-				-0.8
2,854,335	-				-0.0
2,854,345	-				-1.0
2,854,406	-				+0.0
2,854,523	+	yfhL	HEPCGN_20590	0.32	+1.0
2,854,527	-	yfhL	HEPCGN_20590	0.33	+0.4
2,854,568	-	yfhL	HEPCGN_20590	0.49	-0.2
2,854,575	+	yfhL	HEPCGN_20590	0.52	-2.4
2,854,575	+	yfhL	HEPCGN_20590	0.52	-0.2
2,854,586	+	yfhL	HEPCGN_20590	0.56	-0.6
2,854,593	-	yfhL	HEPCGN_20590	0.59	-0.5
2,854,614	-	yfhL	HEPCGN_20590	0.67	-0.0
2,854,661	+	yfhL	HEPCGN_20590	0.85	+0.1
2,854,690	-				-0.2
2,854,741	-				-0.3
2,854,794	+				-1.0
2,854,795	-				+0.1
2,854,917	+	yfhH	HEPCGN_20595	0.19	+0.4
2,854,917	+	yfhH	HEPCGN_20595	0.19	-0.3
2,854,918	-	yfhH	HEPCGN_20595	0.19	-0.4
2,854,918	-	yfhH	HEPCGN_20595	0.19	-0.4
2,854,918	-	yfhH	HEPCGN_20595	0.19	+0.4
2,854,919	+	yfhH	HEPCGN_20595	0.19	+0.2
2,854,920	-	yfhH	HEPCGN_20595	0.19	-0.3
2,854,959	+	yfhH	HEPCGN_20595	0.24	-0.4
2,854,960	-	yfhH	HEPCGN_20595	0.24	+0.1
2,855,084	-	yfhH	HEPCGN_20595	0.39	+0.2
2,855,088	+	yfhH	HEPCGN_20595	0.39	-2.7
2,855,088	+	yfhH	HEPCGN_20595	0.39	-1.1
2,855,106	+	yfhH	HEPCGN_20595	0.41	+1.5
2,855,200	+	yfhH	HEPCGN_20595	0.52	+0.1