Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13620

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_13615 and HEPCGN_13620 are separated by 144 nucleotidesHEPCGN_13620 and HEPCGN_13625 are separated by 175 nucleotides HEPCGN_13615: HEPCGN_13615 - Type III effector protein, at 1,470,784 to 1,473,273 _13615 HEPCGN_13620: HEPCGN_13620 - hypothetical protein, at 1,473,418 to 1,473,567 _13620 HEPCGN_13625: HEPCGN_13625 - type III effector protein, at 1,473,743 to 1,474,930 _13625 Position (kb) 1473 1474Strain fitness (log2 ratio) -1 0 1at 1472.494 kb on - strand, within HEPCGN_13615at 1472.514 kb on + strand, within HEPCGN_13615at 1472.517 kb on + strand, within HEPCGN_13615at 1472.517 kb on + strand, within HEPCGN_13615at 1472.890 kb on + strand, within HEPCGN_13615at 1472.891 kb on - strand, within HEPCGN_13615at 1473.450 kb on + strand, within HEPCGN_13620at 1473.546 kb on + strand, within HEPCGN_13620at 1473.554 kb on + strandat 1473.558 kb on + strandat 1473.628 kb on + strandat 1473.720 kb on - strandat 1473.950 kb on - strand, within HEPCGN_13625at 1473.958 kb on + strand, within HEPCGN_13625at 1474.017 kb on - strand, within HEPCGN_13625at 1474.416 kb on - strand, within HEPCGN_13625

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,472,494 - HEPCGN_13615 0.69 +0.0
1,472,514 + HEPCGN_13615 0.69 -0.5
1,472,517 + HEPCGN_13615 0.70 -0.7
1,472,517 + HEPCGN_13615 0.70 +0.0
1,472,890 + HEPCGN_13615 0.85 +1.1
1,472,891 - HEPCGN_13615 0.85 -0.6
1,473,450 + HEPCGN_13620 0.21 -1.2
1,473,546 + HEPCGN_13620 0.85 -0.8
1,473,554 + -0.3
1,473,558 + +0.4
1,473,628 + -0.2
1,473,720 - -0.0
1,473,950 - HEPCGN_13625 0.17 -0.1
1,473,958 + HEPCGN_13625 0.18 -0.6
1,474,017 - HEPCGN_13625 0.23 +0.1
1,474,416 - HEPCGN_13625 0.57 -0.3

Or see this region's nucleotide sequence