Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13165

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_13155 and cyaY are separated by 47 nucleotidescyaY and cyaA are separated by 39 nucleotidescyaA and hemC are separated by 365 nucleotides HEPCGN_13155: HEPCGN_13155 - DKNYY family, at 1,374,574 to 1,376,601 _13155 HEPCGN_13160: cyaY - iron donor protein CyaY, at 1,376,649 to 1,376,969 cyaY HEPCGN_13165: cyaA - class I adenylate cyclase, at 1,377,009 to 1,379,555 cyaA HEPCGN_13170: hemC - hydroxymethylbilane synthase, at 1,379,921 to 1,380,883 hemC Position (kb) 1377 1378 1379 1380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1376.037 kb on + strand, within HEPCGN_13155at 1376.038 kb on - strand, within HEPCGN_13155at 1376.106 kb on + strand, within HEPCGN_13155at 1376.228 kb on - strand, within HEPCGN_13155at 1376.270 kb on + strand, within HEPCGN_13155at 1376.271 kb on - strand, within HEPCGN_13155at 1376.271 kb on - strand, within HEPCGN_13155at 1376.336 kb on - strand, within HEPCGN_13155at 1376.368 kb on - strand, within HEPCGN_13155at 1376.368 kb on - strand, within HEPCGN_13155at 1376.438 kb on - strandat 1376.440 kb on - strandat 1376.496 kb on + strandat 1376.496 kb on + strandat 1376.497 kb on - strandat 1376.497 kb on - strandat 1376.642 kb on + strandat 1376.643 kb on - strandat 1376.771 kb on + strand, within cyaYat 1376.771 kb on + strand, within cyaYat 1376.772 kb on - strand, within cyaYat 1376.772 kb on - strand, within cyaYat 1376.798 kb on + strand, within cyaYat 1376.828 kb on - strand, within cyaYat 1377.068 kb on + strandat 1377.174 kb on - strandat 1377.197 kb on - strandat 1377.250 kb on + strandat 1377.250 kb on + strandat 1377.250 kb on + strandat 1377.250 kb on + strandat 1377.283 kb on + strand, within cyaAat 1377.284 kb on - strand, within cyaAat 1377.287 kb on + strand, within cyaAat 1377.290 kb on + strand, within cyaAat 1377.291 kb on - strand, within cyaAat 1377.419 kb on + strand, within cyaAat 1377.420 kb on - strand, within cyaAat 1377.420 kb on - strand, within cyaAat 1377.471 kb on + strand, within cyaAat 1377.573 kb on - strand, within cyaAat 1377.602 kb on + strand, within cyaAat 1377.631 kb on + strand, within cyaAat 1377.631 kb on + strand, within cyaAat 1377.632 kb on - strand, within cyaAat 1377.878 kb on - strand, within cyaAat 1377.878 kb on - strand, within cyaAat 1378.001 kb on + strand, within cyaAat 1378.002 kb on - strand, within cyaAat 1378.029 kb on - strand, within cyaAat 1378.031 kb on + strand, within cyaAat 1378.032 kb on - strand, within cyaAat 1378.032 kb on - strand, within cyaAat 1378.065 kb on - strand, within cyaAat 1378.104 kb on - strand, within cyaAat 1378.104 kb on - strand, within cyaAat 1378.156 kb on + strand, within cyaAat 1378.156 kb on + strand, within cyaAat 1378.157 kb on - strand, within cyaAat 1378.162 kb on + strand, within cyaAat 1378.163 kb on - strand, within cyaAat 1378.199 kb on - strand, within cyaAat 1378.199 kb on - strand, within cyaAat 1378.199 kb on - strand, within cyaAat 1378.199 kb on - strand, within cyaAat 1378.202 kb on + strand, within cyaAat 1378.203 kb on - strand, within cyaAat 1378.262 kb on + strand, within cyaAat 1378.338 kb on - strand, within cyaAat 1378.344 kb on - strand, within cyaAat 1379.546 kb on - strandat 1379.546 kb on - strandat 1379.561 kb on - strandat 1379.649 kb on - strandat 1379.757 kb on - strandat 1379.760 kb on + strandat 1379.768 kb on + strandat 1379.768 kb on + strandat 1379.769 kb on - strandat 1379.799 kb on + strandat 1379.846 kb on + strandat 1379.866 kb on - strandat 1379.906 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,376,037 + HEPCGN_13155 0.72 -0.4
1,376,038 - HEPCGN_13155 0.72 -0.2
1,376,106 + HEPCGN_13155 0.76 +1.2
1,376,228 - HEPCGN_13155 0.82 +0.1
1,376,270 + HEPCGN_13155 0.84 -0.4
1,376,271 - HEPCGN_13155 0.84 +0.3
1,376,271 - HEPCGN_13155 0.84 -0.4
1,376,336 - HEPCGN_13155 0.87 +0.2
1,376,368 - HEPCGN_13155 0.88 +0.6
1,376,368 - HEPCGN_13155 0.88 +0.3
1,376,438 - -0.0
1,376,440 - -0.2
1,376,496 + +0.4
1,376,496 + +0.5
1,376,497 - +0.3
1,376,497 - +0.7
1,376,642 + +0.9
1,376,643 - -1.0
1,376,771 + cyaY HEPCGN_13160 0.38 -3.5
1,376,771 + cyaY HEPCGN_13160 0.38 -1.8
1,376,772 - cyaY HEPCGN_13160 0.38 -0.6
1,376,772 - cyaY HEPCGN_13160 0.38 -0.1
1,376,798 + cyaY HEPCGN_13160 0.46 -1.9
1,376,828 - cyaY HEPCGN_13160 0.56 -0.9
1,377,068 + +0.1
1,377,174 - -1.6
1,377,197 - -2.7
1,377,250 + -1.8
1,377,250 + -3.3
1,377,250 + -1.7
1,377,250 + +0.1
1,377,283 + cyaA HEPCGN_13165 0.11 -1.9
1,377,284 - cyaA HEPCGN_13165 0.11 -0.9
1,377,287 + cyaA HEPCGN_13165 0.11 -0.6
1,377,290 + cyaA HEPCGN_13165 0.11 -2.0
1,377,291 - cyaA HEPCGN_13165 0.11 -2.1
1,377,419 + cyaA HEPCGN_13165 0.16 -1.5
1,377,420 - cyaA HEPCGN_13165 0.16 +0.0
1,377,420 - cyaA HEPCGN_13165 0.16 -1.5
1,377,471 + cyaA HEPCGN_13165 0.18 -0.1
1,377,573 - cyaA HEPCGN_13165 0.22 +0.9
1,377,602 + cyaA HEPCGN_13165 0.23 -1.4
1,377,631 + cyaA HEPCGN_13165 0.24 -0.4
1,377,631 + cyaA HEPCGN_13165 0.24 -0.1
1,377,632 - cyaA HEPCGN_13165 0.24 -0.7
1,377,878 - cyaA HEPCGN_13165 0.34 -0.6
1,377,878 - cyaA HEPCGN_13165 0.34 -0.9
1,378,001 + cyaA HEPCGN_13165 0.39 +0.1
1,378,002 - cyaA HEPCGN_13165 0.39 -0.7
1,378,029 - cyaA HEPCGN_13165 0.40 -1.6
1,378,031 + cyaA HEPCGN_13165 0.40 +1.2
1,378,032 - cyaA HEPCGN_13165 0.40 +0.1
1,378,032 - cyaA HEPCGN_13165 0.40 -0.6
1,378,065 - cyaA HEPCGN_13165 0.41 -0.9
1,378,104 - cyaA HEPCGN_13165 0.43 +2.2
1,378,104 - cyaA HEPCGN_13165 0.43 -1.8
1,378,156 + cyaA HEPCGN_13165 0.45 -0.9
1,378,156 + cyaA HEPCGN_13165 0.45 +0.9
1,378,157 - cyaA HEPCGN_13165 0.45 +3.2
1,378,162 + cyaA HEPCGN_13165 0.45 -0.8
1,378,163 - cyaA HEPCGN_13165 0.45 -1.9
1,378,199 - cyaA HEPCGN_13165 0.47 -0.7
1,378,199 - cyaA HEPCGN_13165 0.47 -1.1
1,378,199 - cyaA HEPCGN_13165 0.47 -1.8
1,378,199 - cyaA HEPCGN_13165 0.47 -2.3
1,378,202 + cyaA HEPCGN_13165 0.47 +0.4
1,378,203 - cyaA HEPCGN_13165 0.47 +1.2
1,378,262 + cyaA HEPCGN_13165 0.49 -1.0
1,378,338 - cyaA HEPCGN_13165 0.52 +1.0
1,378,344 - cyaA HEPCGN_13165 0.52 +0.4
1,379,546 - +0.9
1,379,546 - -1.3
1,379,561 - -1.2
1,379,649 - -1.8
1,379,757 - -0.1
1,379,760 + +1.1
1,379,768 + -1.1
1,379,768 + -0.9
1,379,769 - -1.5
1,379,799 + -0.1
1,379,846 + +0.5
1,379,866 - +0.1
1,379,906 + +0.0

Or see this region's nucleotide sequence