Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10655
Experiment: K25
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | K25 |
---|---|---|---|---|---|
remove | |||||
869,890 | + | yjeH | HEPCGN_10645 | 0.89 | +0.8 |
870,030 | + | +0.1 | |||
870,030 | + | +0.3 | |||
870,050 | - | +0.5 | |||
870,050 | - | +0.5 | |||
870,050 | - | +0.3 | |||
870,068 | + | -1.4 | |||
870,069 | - | -0.9 | |||
870,231 | + | fxsA | HEPCGN_10650 | 0.38 | +0.7 |
870,267 | + | fxsA | HEPCGN_10650 | 0.46 | -0.5 |
870,305 | + | fxsA | HEPCGN_10650 | 0.54 | +1.0 |
870,305 | + | fxsA | HEPCGN_10650 | 0.54 | -1.9 |
870,384 | + | fxsA | HEPCGN_10650 | 0.70 | +1.0 |
870,396 | - | fxsA | HEPCGN_10650 | 0.73 | +0.4 |
870,414 | + | fxsA | HEPCGN_10650 | 0.77 | +0.2 |
870,415 | - | fxsA | HEPCGN_10650 | 0.77 | +0.2 |
870,415 | - | fxsA | HEPCGN_10650 | 0.77 | -0.0 |
870,447 | + | fxsA | HEPCGN_10650 | 0.84 | -0.2 |
870,482 | + | -0.6 | |||
870,483 | - | +0.5 | |||
870,484 | + | +0.9 | |||
870,484 | + | +0.9 | |||
870,485 | - | +0.7 | |||
870,491 | - | -0.8 | |||
870,540 | + | +1.9 | |||
870,540 | + | +2.0 | |||
870,541 | - | +0.1 | |||
870,593 | - | +0.4 | |||
870,595 | - | -1.0 | |||
870,595 | - | -0.9 | |||
870,646 | + | +1.3 | |||
870,666 | - | -0.3 | |||
870,684 | + | -0.4 | |||
870,705 | + | -0.2 | |||
870,706 | - | -0.7 | |||
870,744 | + | +0.0 | |||
870,745 | - | +0.4 | |||
870,810 | + | +2.3 | |||
870,879 | - | +0.2 | |||
870,924 | + | -0.5 | |||
870,924 | + | -0.7 | |||
870,924 | + | -0.5 | |||
870,924 | + | -0.0 | |||
870,927 | + | -1.2 | |||
870,927 | + | -0.2 | |||
870,927 | + | -1.6 | |||
870,927 | + | -0.7 | |||
870,928 | - | -1.1 | |||
870,928 | - | +1.2 | |||
870,928 | - | -0.3 | |||
870,964 | - | -0.5 | |||
870,989 | + | -1.8 | |||
870,990 | - | +0.1 | |||
871,144 | + | aspA | HEPCGN_10655 | 0.20 | +1.1 |
871,169 | + | aspA | HEPCGN_10655 | 0.21 | -1.4 |
871,170 | - | aspA | HEPCGN_10655 | 0.22 | +0.2 |
871,245 | + | aspA | HEPCGN_10655 | 0.27 | +1.0 |
871,245 | + | aspA | HEPCGN_10655 | 0.27 | -1.4 |
871,251 | + | aspA | HEPCGN_10655 | 0.27 | -1.8 |
871,352 | - | aspA | HEPCGN_10655 | 0.34 | -0.4 |
871,389 | - | aspA | HEPCGN_10655 | 0.37 | -0.7 |
871,520 | + | aspA | HEPCGN_10655 | 0.46 | +1.4 |
871,689 | + | aspA | HEPCGN_10655 | 0.58 | -1.3 |
871,689 | + | aspA | HEPCGN_10655 | 0.58 | -0.1 |
871,689 | + | aspA | HEPCGN_10655 | 0.58 | -1.0 |
871,690 | - | aspA | HEPCGN_10655 | 0.58 | +0.0 |
871,690 | - | aspA | HEPCGN_10655 | 0.58 | -0.5 |
871,839 | - | aspA | HEPCGN_10655 | 0.68 | +0.1 |
871,839 | - | aspA | HEPCGN_10655 | 0.68 | -0.8 |
871,843 | + | aspA | HEPCGN_10655 | 0.68 | -1.8 |
871,844 | - | aspA | HEPCGN_10655 | 0.68 | -1.9 |
871,876 | + | aspA | HEPCGN_10655 | 0.71 | -0.3 |
871,876 | + | aspA | HEPCGN_10655 | 0.71 | -1.2 |
871,877 | - | aspA | HEPCGN_10655 | 0.71 | +0.6 |
871,911 | - | aspA | HEPCGN_10655 | 0.73 | -2.2 |
871,950 | - | aspA | HEPCGN_10655 | 0.76 | -1.0 |
871,950 | - | aspA | HEPCGN_10655 | 0.76 | -0.8 |
872,011 | - | aspA | HEPCGN_10655 | 0.80 | -0.0 |
872,076 | + | aspA | HEPCGN_10655 | 0.85 | -2.2 |
872,090 | + | aspA | HEPCGN_10655 | 0.86 | -0.6 |
872,091 | - | aspA | HEPCGN_10655 | 0.86 | -0.5 |
872,096 | + | aspA | HEPCGN_10655 | 0.86 | -0.0 |
872,097 | - | aspA | HEPCGN_10655 | 0.86 | -1.6 |
872,260 | - | -0.7 | |||
872,276 | + | -0.4 | |||
872,277 | - | -0.9 | |||
872,296 | - | -0.6 | |||
872,317 | + | +0.2 | |||
872,317 | + | +0.2 | |||
872,318 | - | -1.8 | |||
872,318 | - | +0.5 | |||
872,367 | - | -0.2 | |||
872,411 | + | +0.0 | |||
872,412 | - | -0.4 | |||
872,414 | + | +0.4 | |||
872,415 | - | -0.0 | |||
872,415 | - | -0.1 | |||
872,419 | + | +0.2 | |||
872,419 | + | -0.9 | |||
872,420 | - | +0.2 | |||
872,420 | - | +0.7 | |||
872,420 | - | -0.1 | |||
872,420 | - | -1.0 | |||
872,425 | + | +0.0 | |||
872,479 | + | +0.1 | |||
872,480 | - | +0.4 | |||
872,625 | + | dcuA | HEPCGN_10665 | 0.16 | +0.3 |
872,626 | - | dcuA | HEPCGN_10665 | 0.16 | -0.9 |
872,626 | - | dcuA | HEPCGN_10665 | 0.16 | -0.4 |
872,670 | + | dcuA | HEPCGN_10665 | 0.20 | -0.3 |
872,671 | - | dcuA | HEPCGN_10665 | 0.20 | +0.2 |
872,671 | - | dcuA | HEPCGN_10665 | 0.20 | +0.4 |
872,671 | - | dcuA | HEPCGN_10665 | 0.20 | -0.4 |
872,711 | + | dcuA | HEPCGN_10665 | 0.23 | -0.2 |
872,757 | - | dcuA | HEPCGN_10665 | 0.26 | -1.2 |
872,808 | - | dcuA | HEPCGN_10665 | 0.30 | +1.0 |
872,868 | + | dcuA | HEPCGN_10665 | 0.35 | +0.4 |
872,868 | + | dcuA | HEPCGN_10665 | 0.35 | +0.8 |
872,869 | - | dcuA | HEPCGN_10665 | 0.35 | +0.9 |
872,904 | + | dcuA | HEPCGN_10665 | 0.38 | +0.7 |
872,904 | + | dcuA | HEPCGN_10665 | 0.38 | +0.3 |
872,975 | + | dcuA | HEPCGN_10665 | 0.43 | +0.6 |
872,975 | + | dcuA | HEPCGN_10665 | 0.43 | +0.6 |
873,115 | + | dcuA | HEPCGN_10665 | 0.54 | +0.1 |
873,116 | - | dcuA | HEPCGN_10665 | 0.54 | +0.1 |
873,128 | + | dcuA | HEPCGN_10665 | 0.55 | +1.0 |
873,128 | + | dcuA | HEPCGN_10665 | 0.55 | +0.2 |
873,128 | + | dcuA | HEPCGN_10665 | 0.55 | +0.1 |
873,132 | + | dcuA | HEPCGN_10665 | 0.55 | +0.7 |
873,133 | - | dcuA | HEPCGN_10665 | 0.55 | +0.7 |
873,133 | - | dcuA | HEPCGN_10665 | 0.55 | -0.3 |
873,133 | - | dcuA | HEPCGN_10665 | 0.55 | +0.2 |
873,133 | - | dcuA | HEPCGN_10665 | 0.55 | +0.2 |
873,239 | + | dcuA | HEPCGN_10665 | 0.63 | -0.0 |
873,240 | - | dcuA | HEPCGN_10665 | 0.63 | -0.0 |
873,293 | + | dcuA | HEPCGN_10665 | 0.67 | +0.6 |
873,293 | + | dcuA | HEPCGN_10665 | 0.67 | -0.3 |
873,293 | + | dcuA | HEPCGN_10665 | 0.67 | +0.9 |
Or see this region's nucleotide sequence