Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10655

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjeH and fxsA are separated by 15 nucleotidesfxsA and aspA are separated by 336 nucleotidesaspA and HEPCGN_10660 are separated by 36 nucleotidesHEPCGN_10660 and dcuA are separated by 51 nucleotides HEPCGN_10645: yjeH - L-methionine/branched-chain amino acid transporter, at 868,776 to 870,032 yjeH HEPCGN_10650: fxsA - membrane protein FxsA, at 870,048 to 870,524 fxsA HEPCGN_10655: aspA - aspartate ammonia-lyase, at 870,861 to 872,297 aspA HEPCGN_10660: HEPCGN_10660 - URF 1, at 872,334 to 872,363 _10660 HEPCGN_10665: dcuA - anaerobic C4-dicarboxylate transporter DcuA, at 872,415 to 873,716 dcuA Position (kb) 870 871 872 873Strain fitness (log2 ratio) -2 -1 0 1 2at 869.890 kb on + strand, within yjeHat 870.030 kb on + strandat 870.030 kb on + strandat 870.050 kb on - strandat 870.050 kb on - strandat 870.050 kb on - strandat 870.068 kb on + strandat 870.069 kb on - strandat 870.231 kb on + strand, within fxsAat 870.267 kb on + strand, within fxsAat 870.305 kb on + strand, within fxsAat 870.305 kb on + strand, within fxsAat 870.384 kb on + strand, within fxsAat 870.396 kb on - strand, within fxsAat 870.414 kb on + strand, within fxsAat 870.415 kb on - strand, within fxsAat 870.415 kb on - strand, within fxsAat 870.447 kb on + strand, within fxsAat 870.482 kb on + strandat 870.483 kb on - strandat 870.484 kb on + strandat 870.484 kb on + strandat 870.485 kb on - strandat 870.491 kb on - strandat 870.540 kb on + strandat 870.540 kb on + strandat 870.541 kb on - strandat 870.593 kb on - strandat 870.595 kb on - strandat 870.595 kb on - strandat 870.646 kb on + strandat 870.666 kb on - strandat 870.684 kb on + strandat 870.705 kb on + strandat 870.706 kb on - strandat 870.744 kb on + strandat 870.745 kb on - strandat 870.810 kb on + strandat 870.879 kb on - strandat 870.924 kb on + strandat 870.924 kb on + strandat 870.924 kb on + strandat 870.924 kb on + strandat 870.927 kb on + strandat 870.927 kb on + strandat 870.927 kb on + strandat 870.927 kb on + strandat 870.928 kb on - strandat 870.928 kb on - strandat 870.928 kb on - strandat 870.964 kb on - strandat 870.989 kb on + strandat 870.990 kb on - strandat 871.144 kb on + strand, within aspAat 871.169 kb on + strand, within aspAat 871.170 kb on - strand, within aspAat 871.245 kb on + strand, within aspAat 871.245 kb on + strand, within aspAat 871.251 kb on + strand, within aspAat 871.352 kb on - strand, within aspAat 871.389 kb on - strand, within aspAat 871.520 kb on + strand, within aspAat 871.689 kb on + strand, within aspAat 871.689 kb on + strand, within aspAat 871.689 kb on + strand, within aspAat 871.690 kb on - strand, within aspAat 871.690 kb on - strand, within aspAat 871.839 kb on - strand, within aspAat 871.839 kb on - strand, within aspAat 871.843 kb on + strand, within aspAat 871.844 kb on - strand, within aspAat 871.876 kb on + strand, within aspAat 871.876 kb on + strand, within aspAat 871.877 kb on - strand, within aspAat 871.911 kb on - strand, within aspAat 871.950 kb on - strand, within aspAat 871.950 kb on - strand, within aspAat 872.011 kb on - strand, within aspAat 872.076 kb on + strand, within aspAat 872.090 kb on + strand, within aspAat 872.091 kb on - strand, within aspAat 872.096 kb on + strand, within aspAat 872.097 kb on - strand, within aspAat 872.260 kb on - strandat 872.276 kb on + strandat 872.277 kb on - strandat 872.296 kb on - strandat 872.317 kb on + strandat 872.317 kb on + strandat 872.318 kb on - strandat 872.318 kb on - strandat 872.367 kb on - strandat 872.411 kb on + strandat 872.412 kb on - strandat 872.414 kb on + strandat 872.415 kb on - strandat 872.415 kb on - strandat 872.419 kb on + strandat 872.419 kb on + strandat 872.420 kb on - strandat 872.420 kb on - strandat 872.420 kb on - strandat 872.420 kb on - strandat 872.425 kb on + strandat 872.479 kb on + strandat 872.480 kb on - strandat 872.625 kb on + strand, within dcuAat 872.626 kb on - strand, within dcuAat 872.626 kb on - strand, within dcuAat 872.670 kb on + strand, within dcuAat 872.671 kb on - strand, within dcuAat 872.671 kb on - strand, within dcuAat 872.671 kb on - strand, within dcuAat 872.711 kb on + strand, within dcuAat 872.757 kb on - strand, within dcuAat 872.808 kb on - strand, within dcuAat 872.868 kb on + strand, within dcuAat 872.868 kb on + strand, within dcuAat 872.869 kb on - strand, within dcuAat 872.904 kb on + strand, within dcuAat 872.904 kb on + strand, within dcuAat 872.975 kb on + strand, within dcuAat 872.975 kb on + strand, within dcuAat 873.115 kb on + strand, within dcuAat 873.116 kb on - strand, within dcuAat 873.128 kb on + strand, within dcuAat 873.128 kb on + strand, within dcuAat 873.128 kb on + strand, within dcuAat 873.132 kb on + strand, within dcuAat 873.133 kb on - strand, within dcuAat 873.133 kb on - strand, within dcuAat 873.133 kb on - strand, within dcuAat 873.133 kb on - strand, within dcuAat 873.239 kb on + strand, within dcuAat 873.240 kb on - strand, within dcuAat 873.293 kb on + strand, within dcuAat 873.293 kb on + strand, within dcuAat 873.293 kb on + strand, within dcuA

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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869,890 + yjeH HEPCGN_10645 0.89 +0.8
870,030 + +0.1
870,030 + +0.3
870,050 - +0.5
870,050 - +0.5
870,050 - +0.3
870,068 + -1.4
870,069 - -0.9
870,231 + fxsA HEPCGN_10650 0.38 +0.7
870,267 + fxsA HEPCGN_10650 0.46 -0.5
870,305 + fxsA HEPCGN_10650 0.54 +1.0
870,305 + fxsA HEPCGN_10650 0.54 -1.9
870,384 + fxsA HEPCGN_10650 0.70 +1.0
870,396 - fxsA HEPCGN_10650 0.73 +0.4
870,414 + fxsA HEPCGN_10650 0.77 +0.2
870,415 - fxsA HEPCGN_10650 0.77 +0.2
870,415 - fxsA HEPCGN_10650 0.77 -0.0
870,447 + fxsA HEPCGN_10650 0.84 -0.2
870,482 + -0.6
870,483 - +0.5
870,484 + +0.9
870,484 + +0.9
870,485 - +0.7
870,491 - -0.8
870,540 + +1.9
870,540 + +2.0
870,541 - +0.1
870,593 - +0.4
870,595 - -1.0
870,595 - -0.9
870,646 + +1.3
870,666 - -0.3
870,684 + -0.4
870,705 + -0.2
870,706 - -0.7
870,744 + +0.0
870,745 - +0.4
870,810 + +2.3
870,879 - +0.2
870,924 + -0.5
870,924 + -0.7
870,924 + -0.5
870,924 + -0.0
870,927 + -1.2
870,927 + -0.2
870,927 + -1.6
870,927 + -0.7
870,928 - -1.1
870,928 - +1.2
870,928 - -0.3
870,964 - -0.5
870,989 + -1.8
870,990 - +0.1
871,144 + aspA HEPCGN_10655 0.20 +1.1
871,169 + aspA HEPCGN_10655 0.21 -1.4
871,170 - aspA HEPCGN_10655 0.22 +0.2
871,245 + aspA HEPCGN_10655 0.27 +1.0
871,245 + aspA HEPCGN_10655 0.27 -1.4
871,251 + aspA HEPCGN_10655 0.27 -1.8
871,352 - aspA HEPCGN_10655 0.34 -0.4
871,389 - aspA HEPCGN_10655 0.37 -0.7
871,520 + aspA HEPCGN_10655 0.46 +1.4
871,689 + aspA HEPCGN_10655 0.58 -1.3
871,689 + aspA HEPCGN_10655 0.58 -0.1
871,689 + aspA HEPCGN_10655 0.58 -1.0
871,690 - aspA HEPCGN_10655 0.58 +0.0
871,690 - aspA HEPCGN_10655 0.58 -0.5
871,839 - aspA HEPCGN_10655 0.68 +0.1
871,839 - aspA HEPCGN_10655 0.68 -0.8
871,843 + aspA HEPCGN_10655 0.68 -1.8
871,844 - aspA HEPCGN_10655 0.68 -1.9
871,876 + aspA HEPCGN_10655 0.71 -0.3
871,876 + aspA HEPCGN_10655 0.71 -1.2
871,877 - aspA HEPCGN_10655 0.71 +0.6
871,911 - aspA HEPCGN_10655 0.73 -2.2
871,950 - aspA HEPCGN_10655 0.76 -1.0
871,950 - aspA HEPCGN_10655 0.76 -0.8
872,011 - aspA HEPCGN_10655 0.80 -0.0
872,076 + aspA HEPCGN_10655 0.85 -2.2
872,090 + aspA HEPCGN_10655 0.86 -0.6
872,091 - aspA HEPCGN_10655 0.86 -0.5
872,096 + aspA HEPCGN_10655 0.86 -0.0
872,097 - aspA HEPCGN_10655 0.86 -1.6
872,260 - -0.7
872,276 + -0.4
872,277 - -0.9
872,296 - -0.6
872,317 + +0.2
872,317 + +0.2
872,318 - -1.8
872,318 - +0.5
872,367 - -0.2
872,411 + +0.0
872,412 - -0.4
872,414 + +0.4
872,415 - -0.0
872,415 - -0.1
872,419 + +0.2
872,419 + -0.9
872,420 - +0.2
872,420 - +0.7
872,420 - -0.1
872,420 - -1.0
872,425 + +0.0
872,479 + +0.1
872,480 - +0.4
872,625 + dcuA HEPCGN_10665 0.16 +0.3
872,626 - dcuA HEPCGN_10665 0.16 -0.9
872,626 - dcuA HEPCGN_10665 0.16 -0.4
872,670 + dcuA HEPCGN_10665 0.20 -0.3
872,671 - dcuA HEPCGN_10665 0.20 +0.2
872,671 - dcuA HEPCGN_10665 0.20 +0.4
872,671 - dcuA HEPCGN_10665 0.20 -0.4
872,711 + dcuA HEPCGN_10665 0.23 -0.2
872,757 - dcuA HEPCGN_10665 0.26 -1.2
872,808 - dcuA HEPCGN_10665 0.30 +1.0
872,868 + dcuA HEPCGN_10665 0.35 +0.4
872,868 + dcuA HEPCGN_10665 0.35 +0.8
872,869 - dcuA HEPCGN_10665 0.35 +0.9
872,904 + dcuA HEPCGN_10665 0.38 +0.7
872,904 + dcuA HEPCGN_10665 0.38 +0.3
872,975 + dcuA HEPCGN_10665 0.43 +0.6
872,975 + dcuA HEPCGN_10665 0.43 +0.6
873,115 + dcuA HEPCGN_10665 0.54 +0.1
873,116 - dcuA HEPCGN_10665 0.54 +0.1
873,128 + dcuA HEPCGN_10665 0.55 +1.0
873,128 + dcuA HEPCGN_10665 0.55 +0.2
873,128 + dcuA HEPCGN_10665 0.55 +0.1
873,132 + dcuA HEPCGN_10665 0.55 +0.7
873,133 - dcuA HEPCGN_10665 0.55 +0.7
873,133 - dcuA HEPCGN_10665 0.55 -0.3
873,133 - dcuA HEPCGN_10665 0.55 +0.2
873,133 - dcuA HEPCGN_10665 0.55 +0.2
873,239 + dcuA HEPCGN_10665 0.63 -0.0
873,240 - dcuA HEPCGN_10665 0.63 -0.0
873,293 + dcuA HEPCGN_10665 0.67 +0.6
873,293 + dcuA HEPCGN_10665 0.67 -0.3
873,293 + dcuA HEPCGN_10665 0.67 +0.9

Or see this region's nucleotide sequence