Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dinB and lafU are separated by 70 nucleotides lafU and HEPCGN_07835 are separated by 94 nucleotides
HEPCGN_07825: dinB - DNA polymerase IV, at 307,313 to 308,368
dinB
HEPCGN_07830: lafU - putative lateral flagellar export/assembly protein LafU, at 308,439 to 309,074
lafU
HEPCGN_07835: HEPCGN_07835 - Flagellar system protein, at 309,169 to 310,206
_07835
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1
2 at 307.499 kb on + strand, within dinB at 307.526 kb on + strand, within dinB at 307.527 kb on - strand, within dinB at 307.538 kb on + strand, within dinB at 307.539 kb on - strand, within dinB at 307.569 kb on + strand, within dinB at 307.613 kb on - strand, within dinB at 307.693 kb on + strand, within dinB at 307.901 kb on - strand, within dinB at 307.901 kb on - strand, within dinB at 307.976 kb on - strand, within dinB at 308.090 kb on - strand, within dinB at 308.090 kb on - strand, within dinB at 308.092 kb on - strand, within dinB at 308.284 kb on + strand at 308.363 kb on - strand at 308.525 kb on - strand, within lafU at 308.530 kb on + strand, within lafU at 308.652 kb on - strand, within lafU at 308.728 kb on + strand, within lafU at 308.728 kb on + strand, within lafU at 308.729 kb on - strand, within lafU at 308.733 kb on - strand, within lafU at 308.772 kb on - strand, within lafU at 308.841 kb on - strand, within lafU at 308.868 kb on - strand, within lafU at 308.868 kb on - strand, within lafU at 308.901 kb on + strand, within lafU at 309.115 kb on - strand at 309.241 kb on - strand at 309.264 kb on + strand at 309.355 kb on - strand, within HEPCGN_07835 at 309.355 kb on - strand, within HEPCGN_07835 at 309.524 kb on - strand, within HEPCGN_07835 at 309.597 kb on + strand, within HEPCGN_07835 at 309.677 kb on - strand, within HEPCGN_07835 at 309.696 kb on - strand, within HEPCGN_07835 at 309.906 kb on - strand, within HEPCGN_07835 at 310.064 kb on - strand, within HEPCGN_07835 at 310.070 kb on + strand, within HEPCGN_07835
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 307,499 + dinB HEPCGN_07825 0.18 -0.4 307,526 + dinB HEPCGN_07825 0.20 +0.7 307,527 - dinB HEPCGN_07825 0.20 -0.6 307,538 + dinB HEPCGN_07825 0.21 +1.2 307,539 - dinB HEPCGN_07825 0.21 -1.2 307,569 + dinB HEPCGN_07825 0.24 +0.2 307,613 - dinB HEPCGN_07825 0.28 +0.1 307,693 + dinB HEPCGN_07825 0.36 -0.1 307,901 - dinB HEPCGN_07825 0.56 +0.1 307,901 - dinB HEPCGN_07825 0.56 -0.0 307,976 - dinB HEPCGN_07825 0.63 +1.5 308,090 - dinB HEPCGN_07825 0.74 -0.4 308,090 - dinB HEPCGN_07825 0.74 -0.3 308,092 - dinB HEPCGN_07825 0.74 -0.8 308,284 + -0.5 308,363 - +0.2 308,525 - lafU HEPCGN_07830 0.14 -0.4 308,530 + lafU HEPCGN_07830 0.14 -0.9 308,652 - lafU HEPCGN_07830 0.33 +0.3 308,728 + lafU HEPCGN_07830 0.45 -0.4 308,728 + lafU HEPCGN_07830 0.45 -0.5 308,729 - lafU HEPCGN_07830 0.46 +0.3 308,733 - lafU HEPCGN_07830 0.46 -0.5 308,772 - lafU HEPCGN_07830 0.52 +0.5 308,841 - lafU HEPCGN_07830 0.63 -0.4 308,868 - lafU HEPCGN_07830 0.67 -1.0 308,868 - lafU HEPCGN_07830 0.67 -0.9 308,901 + lafU HEPCGN_07830 0.73 -0.7 309,115 - -0.6 309,241 - -0.0 309,264 + -0.7 309,355 - HEPCGN_07835 0.18 +0.3 309,355 - HEPCGN_07835 0.18 -0.9 309,524 - HEPCGN_07835 0.34 +1.2 309,597 + HEPCGN_07835 0.41 +0.2 309,677 - HEPCGN_07835 0.49 -0.5 309,696 - HEPCGN_07835 0.51 -0.0 309,906 - HEPCGN_07835 0.71 -0.9 310,064 - HEPCGN_07835 0.86 -0.9 310,070 + HEPCGN_07835 0.87 +2.1
Or see this region's nucleotide sequence