Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araH and araH overlap by 4 nucleotides araH and ccmA overlap by 8 nucleotides ccmA and rbsB are separated by 48 nucleotides
HEPCGN_07520: araH - sugar ABC transporter permease, at 242,492 to 243,448
araH
HEPCGN_07525: araH - sugar ABC transporter permease, at 243,445 to 244,416
araH
HEPCGN_07530: ccmA - heme ABC exporter ATP-binding protein CcmA, at 244,409 to 245,893
ccmA
HEPCGN_07535: rbsB - LacI family transcriptional regulator, at 245,942 to 246,928
rbsB
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 243.427 kb on + strand at 243.633 kb on + strand, within araH at 243.633 kb on + strand, within araH at 243.724 kb on + strand, within araH at 243.725 kb on - strand, within araH at 243.762 kb on - strand, within araH at 243.848 kb on - strand, within araH at 243.891 kb on + strand, within araH at 243.924 kb on - strand, within araH at 243.961 kb on + strand, within araH at 244.054 kb on - strand, within araH at 244.065 kb on + strand, within araH at 244.065 kb on + strand, within araH at 244.066 kb on - strand, within araH at 244.105 kb on + strand, within araH at 244.105 kb on + strand, within araH at 244.114 kb on + strand, within araH at 244.114 kb on + strand, within araH at 244.227 kb on + strand, within araH at 244.227 kb on + strand, within araH at 244.276 kb on - strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.290 kb on - strand, within araH at 244.294 kb on - strand, within araH at 244.580 kb on - strand, within ccmA at 244.587 kb on + strand, within ccmA at 244.590 kb on - strand, within ccmA at 244.680 kb on - strand, within ccmA at 244.834 kb on + strand, within ccmA at 244.852 kb on + strand, within ccmA at 244.900 kb on - strand, within ccmA at 244.933 kb on + strand, within ccmA at 244.934 kb on - strand, within ccmA at 244.934 kb on - strand, within ccmA at 244.934 kb on - strand, within ccmA at 245.080 kb on + strand, within ccmA at 245.081 kb on - strand, within ccmA at 245.110 kb on + strand, within ccmA at 245.167 kb on - strand, within ccmA at 245.358 kb on - strand, within ccmA at 245.509 kb on + strand, within ccmA at 245.510 kb on - strand, within ccmA at 245.637 kb on + strand, within ccmA at 245.812 kb on + strand at 245.812 kb on + strand at 245.943 kb on + strand at 245.978 kb on + strand at 245.978 kb on + strand at 245.979 kb on - strand at 245.981 kb on + strand at 245.981 kb on + strand at 245.982 kb on - strand at 245.982 kb on - strand at 245.982 kb on - strand at 246.013 kb on + strand at 246.013 kb on + strand at 246.014 kb on - strand at 246.017 kb on + strand at 246.106 kb on - strand, within rbsB at 246.131 kb on - strand, within rbsB at 246.131 kb on - strand, within rbsB at 246.158 kb on - strand, within rbsB at 246.196 kb on - strand, within rbsB at 246.377 kb on - strand, within rbsB at 246.422 kb on + strand, within rbsB at 246.423 kb on - strand, within rbsB at 246.448 kb on + strand, within rbsB at 246.508 kb on - strand, within rbsB at 246.508 kb on - strand, within rbsB at 246.554 kb on - strand, within rbsB at 246.655 kb on + strand, within rbsB at 246.656 kb on - strand, within rbsB at 246.659 kb on - strand, within rbsB at 246.659 kb on - strand, within rbsB at 246.763 kb on + strand, within rbsB at 246.809 kb on - strand, within rbsB at 246.821 kb on - strand, within rbsB
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 243,427 + -0.2 243,633 + araH HEPCGN_07525 0.19 -0.5 243,633 + araH HEPCGN_07525 0.19 -0.4 243,724 + araH HEPCGN_07525 0.29 +0.4 243,725 - araH HEPCGN_07525 0.29 +0.1 243,762 - araH HEPCGN_07525 0.33 -0.3 243,848 - araH HEPCGN_07525 0.41 -0.3 243,891 + araH HEPCGN_07525 0.46 -0.2 243,924 - araH HEPCGN_07525 0.49 -0.3 243,961 + araH HEPCGN_07525 0.53 -0.9 244,054 - araH HEPCGN_07525 0.63 +0.7 244,065 + araH HEPCGN_07525 0.64 -0.3 244,065 + araH HEPCGN_07525 0.64 +0.1 244,066 - araH HEPCGN_07525 0.64 +2.9 244,105 + araH HEPCGN_07525 0.68 +1.0 244,105 + araH HEPCGN_07525 0.68 +0.7 244,114 + araH HEPCGN_07525 0.69 +0.6 244,114 + araH HEPCGN_07525 0.69 -0.1 244,227 + araH HEPCGN_07525 0.80 -0.6 244,227 + araH HEPCGN_07525 0.80 +0.5 244,276 - araH HEPCGN_07525 0.85 +0.1 244,289 + araH HEPCGN_07525 0.87 +0.5 244,289 + araH HEPCGN_07525 0.87 -0.4 244,289 + araH HEPCGN_07525 0.87 -0.3 244,289 + araH HEPCGN_07525 0.87 -1.1 244,290 - araH HEPCGN_07525 0.87 -0.3 244,294 - araH HEPCGN_07525 0.87 -0.6 244,580 - ccmA HEPCGN_07530 0.12 +3.3 244,587 + ccmA HEPCGN_07530 0.12 +0.1 244,590 - ccmA HEPCGN_07530 0.12 +0.3 244,680 - ccmA HEPCGN_07530 0.18 +0.7 244,834 + ccmA HEPCGN_07530 0.29 -0.6 244,852 + ccmA HEPCGN_07530 0.30 +0.9 244,900 - ccmA HEPCGN_07530 0.33 +0.2 244,933 + ccmA HEPCGN_07530 0.35 -0.2 244,934 - ccmA HEPCGN_07530 0.35 +0.5 244,934 - ccmA HEPCGN_07530 0.35 -0.6 244,934 - ccmA HEPCGN_07530 0.35 +0.0 245,080 + ccmA HEPCGN_07530 0.45 +1.5 245,081 - ccmA HEPCGN_07530 0.45 -0.8 245,110 + ccmA HEPCGN_07530 0.47 -0.4 245,167 - ccmA HEPCGN_07530 0.51 +1.2 245,358 - ccmA HEPCGN_07530 0.64 -0.0 245,509 + ccmA HEPCGN_07530 0.74 -0.3 245,510 - ccmA HEPCGN_07530 0.74 -0.0 245,637 + ccmA HEPCGN_07530 0.83 -0.3 245,812 + -0.7 245,812 + +0.7 245,943 + -0.4 245,978 + +0.0 245,978 + +2.4 245,979 - +0.5 245,981 + +1.3 245,981 + +2.9 245,982 - -1.5 245,982 - +0.9 245,982 - -2.2 246,013 + -1.6 246,013 + -0.3 246,014 - -1.0 246,017 + +0.8 246,106 - rbsB HEPCGN_07535 0.17 -0.4 246,131 - rbsB HEPCGN_07535 0.19 -0.1 246,131 - rbsB HEPCGN_07535 0.19 +0.3 246,158 - rbsB HEPCGN_07535 0.22 +0.3 246,196 - rbsB HEPCGN_07535 0.26 -0.3 246,377 - rbsB HEPCGN_07535 0.44 -0.0 246,422 + rbsB HEPCGN_07535 0.49 +0.2 246,423 - rbsB HEPCGN_07535 0.49 +0.8 246,448 + rbsB HEPCGN_07535 0.51 +0.6 246,508 - rbsB HEPCGN_07535 0.57 +0.1 246,508 - rbsB HEPCGN_07535 0.57 +0.8 246,554 - rbsB HEPCGN_07535 0.62 +0.1 246,655 + rbsB HEPCGN_07535 0.72 -0.2 246,656 - rbsB HEPCGN_07535 0.72 -0.8 246,659 - rbsB HEPCGN_07535 0.73 -1.4 246,659 - rbsB HEPCGN_07535 0.73 +0.0 246,763 + rbsB HEPCGN_07535 0.83 -0.8 246,809 - rbsB HEPCGN_07535 0.88 +2.0 246,821 - rbsB HEPCGN_07535 0.89 +0.3
Or see this region's nucleotide sequence