Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05800

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmepH and grxD are separated by 334 nucleotidesgrxD and lhr are separated by 50 nucleotides HEPCGN_05795: mepH - peptidoglycan DD-endopeptidase MepH, at 1,030,029 to 1,030,856 mepH HEPCGN_05800: grxD - monothiol glutaredoxin 4, at 1,031,191 to 1,031,538 grxD HEPCGN_05805: lhr - ATP-dependent helicase, at 1,031,589 to 1,036,205 lhr Position (kb) 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1030.235 kb on + strand, within mepHat 1030.236 kb on - strand, within mepHat 1030.236 kb on - strand, within mepHat 1030.267 kb on + strand, within mepHat 1030.268 kb on - strand, within mepHat 1030.322 kb on - strand, within mepHat 1030.324 kb on + strand, within mepHat 1030.385 kb on + strand, within mepHat 1030.406 kb on + strand, within mepHat 1030.504 kb on + strand, within mepHat 1030.512 kb on - strand, within mepHat 1030.598 kb on + strand, within mepHat 1030.643 kb on + strand, within mepHat 1030.649 kb on + strand, within mepHat 1030.739 kb on + strand, within mepHat 1030.884 kb on - strandat 1030.921 kb on + strandat 1030.921 kb on + strandat 1030.945 kb on - strandat 1031.021 kb on + strandat 1031.022 kb on - strandat 1031.091 kb on + strandat 1031.091 kb on + strandat 1031.091 kb on + strandat 1031.248 kb on + strand, within grxDat 1031.335 kb on + strand, within grxDat 1031.384 kb on - strand, within grxDat 1031.384 kb on - strand, within grxDat 1031.389 kb on - strand, within grxDat 1031.462 kb on - strand, within grxDat 1031.509 kb on + strandat 1031.510 kb on - strandat 1031.586 kb on + strandat 1031.591 kb on - strandat 1031.646 kb on - strandat 1031.670 kb on + strandat 1031.809 kb on + strandat 1031.809 kb on + strandat 1031.809 kb on + strandat 1031.951 kb on - strandat 1032.078 kb on - strand, within lhrat 1032.171 kb on - strand, within lhrat 1032.259 kb on + strand, within lhrat 1032.260 kb on - strand, within lhrat 1032.264 kb on + strand, within lhrat 1032.264 kb on + strand, within lhrat 1032.421 kb on - strand, within lhrat 1032.529 kb on - strand, within lhr

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,030,235 + mepH HEPCGN_05795 0.25 +0.1
1,030,236 - mepH HEPCGN_05795 0.25 +2.9
1,030,236 - mepH HEPCGN_05795 0.25 +1.4
1,030,267 + mepH HEPCGN_05795 0.29 -0.2
1,030,268 - mepH HEPCGN_05795 0.29 -0.3
1,030,322 - mepH HEPCGN_05795 0.35 -0.2
1,030,324 + mepH HEPCGN_05795 0.36 -1.4
1,030,385 + mepH HEPCGN_05795 0.43 +0.4
1,030,406 + mepH HEPCGN_05795 0.46 +0.5
1,030,504 + mepH HEPCGN_05795 0.57 -0.0
1,030,512 - mepH HEPCGN_05795 0.58 +0.2
1,030,598 + mepH HEPCGN_05795 0.69 +1.4
1,030,643 + mepH HEPCGN_05795 0.74 -1.0
1,030,649 + mepH HEPCGN_05795 0.75 +0.2
1,030,739 + mepH HEPCGN_05795 0.86 -0.3
1,030,884 - -0.3
1,030,921 + -0.8
1,030,921 + -0.3
1,030,945 - +1.3
1,031,021 + +0.4
1,031,022 - -0.4
1,031,091 + +0.0
1,031,091 + -1.1
1,031,091 + -0.6
1,031,248 + grxD HEPCGN_05800 0.16 +0.3
1,031,335 + grxD HEPCGN_05800 0.41 -1.1
1,031,384 - grxD HEPCGN_05800 0.55 -0.6
1,031,384 - grxD HEPCGN_05800 0.55 -1.2
1,031,389 - grxD HEPCGN_05800 0.57 -0.3
1,031,462 - grxD HEPCGN_05800 0.78 -1.2
1,031,509 + +0.3
1,031,510 - -0.7
1,031,586 + -0.2
1,031,591 - +0.4
1,031,646 - -0.6
1,031,670 + -1.6
1,031,809 + -1.2
1,031,809 + -0.7
1,031,809 + +0.1
1,031,951 - -0.2
1,032,078 - lhr HEPCGN_05805 0.11 +0.7
1,032,171 - lhr HEPCGN_05805 0.13 -0.3
1,032,259 + lhr HEPCGN_05805 0.15 -2.4
1,032,260 - lhr HEPCGN_05805 0.15 +0.7
1,032,264 + lhr HEPCGN_05805 0.15 -0.3
1,032,264 + lhr HEPCGN_05805 0.15 +0.6
1,032,421 - lhr HEPCGN_05805 0.18 -0.9
1,032,529 - lhr HEPCGN_05805 0.20 -0.3

Or see this region's nucleotide sequence