Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mepH and grxD are separated by 334 nucleotides grxD and lhr are separated by 50 nucleotides
HEPCGN_05795: mepH - peptidoglycan DD-endopeptidase MepH, at 1,030,029 to 1,030,856
mepH
HEPCGN_05800: grxD - monothiol glutaredoxin 4, at 1,031,191 to 1,031,538
grxD
HEPCGN_05805: lhr - ATP-dependent helicase, at 1,031,589 to 1,036,205
lhr
Position (kb)
1031
1032 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1030.235 kb on + strand, within mepH at 1030.236 kb on - strand, within mepH at 1030.236 kb on - strand, within mepH at 1030.267 kb on + strand, within mepH at 1030.268 kb on - strand, within mepH at 1030.322 kb on - strand, within mepH at 1030.324 kb on + strand, within mepH at 1030.385 kb on + strand, within mepH at 1030.406 kb on + strand, within mepH at 1030.504 kb on + strand, within mepH at 1030.512 kb on - strand, within mepH at 1030.598 kb on + strand, within mepH at 1030.643 kb on + strand, within mepH at 1030.649 kb on + strand, within mepH at 1030.739 kb on + strand, within mepH at 1030.884 kb on - strand at 1030.921 kb on + strand at 1030.921 kb on + strand at 1030.945 kb on - strand at 1031.021 kb on + strand at 1031.022 kb on - strand at 1031.091 kb on + strand at 1031.091 kb on + strand at 1031.091 kb on + strand at 1031.248 kb on + strand, within grxD at 1031.335 kb on + strand, within grxD at 1031.384 kb on - strand, within grxD at 1031.384 kb on - strand, within grxD at 1031.389 kb on - strand, within grxD at 1031.462 kb on - strand, within grxD at 1031.509 kb on + strand at 1031.510 kb on - strand at 1031.586 kb on + strand at 1031.591 kb on - strand at 1031.646 kb on - strand at 1031.670 kb on + strand at 1031.809 kb on + strand at 1031.809 kb on + strand at 1031.809 kb on + strand at 1031.951 kb on - strand at 1032.078 kb on - strand, within lhr at 1032.171 kb on - strand, within lhr at 1032.259 kb on + strand, within lhr at 1032.260 kb on - strand, within lhr at 1032.264 kb on + strand, within lhr at 1032.264 kb on + strand, within lhr at 1032.421 kb on - strand, within lhr at 1032.529 kb on - strand, within lhr
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 1,030,235 + mepH HEPCGN_05795 0.25 +0.1 1,030,236 - mepH HEPCGN_05795 0.25 +2.9 1,030,236 - mepH HEPCGN_05795 0.25 +1.4 1,030,267 + mepH HEPCGN_05795 0.29 -0.2 1,030,268 - mepH HEPCGN_05795 0.29 -0.3 1,030,322 - mepH HEPCGN_05795 0.35 -0.2 1,030,324 + mepH HEPCGN_05795 0.36 -1.4 1,030,385 + mepH HEPCGN_05795 0.43 +0.4 1,030,406 + mepH HEPCGN_05795 0.46 +0.5 1,030,504 + mepH HEPCGN_05795 0.57 -0.0 1,030,512 - mepH HEPCGN_05795 0.58 +0.2 1,030,598 + mepH HEPCGN_05795 0.69 +1.4 1,030,643 + mepH HEPCGN_05795 0.74 -1.0 1,030,649 + mepH HEPCGN_05795 0.75 +0.2 1,030,739 + mepH HEPCGN_05795 0.86 -0.3 1,030,884 - -0.3 1,030,921 + -0.8 1,030,921 + -0.3 1,030,945 - +1.3 1,031,021 + +0.4 1,031,022 - -0.4 1,031,091 + +0.0 1,031,091 + -1.1 1,031,091 + -0.6 1,031,248 + grxD HEPCGN_05800 0.16 +0.3 1,031,335 + grxD HEPCGN_05800 0.41 -1.1 1,031,384 - grxD HEPCGN_05800 0.55 -0.6 1,031,384 - grxD HEPCGN_05800 0.55 -1.2 1,031,389 - grxD HEPCGN_05800 0.57 -0.3 1,031,462 - grxD HEPCGN_05800 0.78 -1.2 1,031,509 + +0.3 1,031,510 - -0.7 1,031,586 + -0.2 1,031,591 - +0.4 1,031,646 - -0.6 1,031,670 + -1.6 1,031,809 + -1.2 1,031,809 + -0.7 1,031,809 + +0.1 1,031,951 - -0.2 1,032,078 - lhr HEPCGN_05805 0.11 +0.7 1,032,171 - lhr HEPCGN_05805 0.13 -0.3 1,032,259 + lhr HEPCGN_05805 0.15 -2.4 1,032,260 - lhr HEPCGN_05805 0.15 +0.7 1,032,264 + lhr HEPCGN_05805 0.15 -0.3 1,032,264 + lhr HEPCGN_05805 0.15 +0.6 1,032,421 - lhr HEPCGN_05805 0.18 -0.9 1,032,529 - lhr HEPCGN_05805 0.20 -0.3
Or see this region's nucleotide sequence