Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05565

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiQ and HEPCGN_05560 are separated by 15 nucleotidesHEPCGN_05560 and araC are separated by 102 nucleotidesaraC and ydiO are separated by 42 nucleotides HEPCGN_05555: ydiQ - electron transfer flavoprotein, at 984,909 to 985,694 ydiQ HEPCGN_05560: HEPCGN_05560 - hypothetical protein, at 985,710 to 985,886 _05560 HEPCGN_05565: araC - AraC family transcriptional regulator, at 985,989 to 986,900 araC HEPCGN_05570: ydiO - acyl-CoA dehydrogenase, at 986,943 to 988,094 ydiO Position (kb) 985 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 985.128 kb on + strand, within ydiQat 985.134 kb on - strand, within ydiQat 985.220 kb on + strand, within ydiQat 985.254 kb on - strand, within ydiQat 985.607 kb on + strand, within ydiQat 985.609 kb on + strand, within ydiQat 985.848 kb on + strand, within HEPCGN_05560at 985.849 kb on - strand, within HEPCGN_05560at 985.928 kb on - strandat 985.950 kb on + strandat 985.950 kb on + strandat 985.993 kb on - strandat 986.453 kb on + strand, within araCat 986.670 kb on + strand, within araCat 986.863 kb on + strandat 986.899 kb on - strandat 986.944 kb on + strandat 986.945 kb on - strandat 987.388 kb on + strand, within ydiOat 987.461 kb on - strand, within ydiOat 987.483 kb on - strand, within ydiOat 987.528 kb on - strand, within ydiOat 987.552 kb on - strand, within ydiOat 987.602 kb on + strand, within ydiOat 987.602 kb on + strand, within ydiOat 987.602 kb on + strand, within ydiOat 987.603 kb on - strand, within ydiOat 987.603 kb on - strand, within ydiOat 987.603 kb on - strand, within ydiOat 987.605 kb on - strand, within ydiOat 987.605 kb on - strand, within ydiOat 987.611 kb on - strand, within ydiOat 987.652 kb on + strand, within ydiOat 987.776 kb on + strand, within ydiOat 987.776 kb on + strand, within ydiOat 987.777 kb on - strand, within ydiOat 987.777 kb on - strand, within ydiOat 987.809 kb on + strand, within ydiOat 987.809 kb on + strand, within ydiOat 987.810 kb on - strand, within ydiOat 987.818 kb on + strand, within ydiOat 987.895 kb on + strand, within ydiOat 987.896 kb on - strand, within ydiO

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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985,128 + ydiQ HEPCGN_05555 0.28 -0.7
985,134 - ydiQ HEPCGN_05555 0.29 +0.3
985,220 + ydiQ HEPCGN_05555 0.40 -0.5
985,254 - ydiQ HEPCGN_05555 0.44 -1.2
985,607 + ydiQ HEPCGN_05555 0.89 -0.6
985,609 + ydiQ HEPCGN_05555 0.89 +1.5
985,848 + HEPCGN_05560 0.78 -0.3
985,849 - HEPCGN_05560 0.79 +0.7
985,928 - -0.9
985,950 + -0.0
985,950 + -0.1
985,993 - -0.1
986,453 + araC HEPCGN_05565 0.51 -3.0
986,670 + araC HEPCGN_05565 0.75 -0.5
986,863 + -1.1
986,899 - +0.7
986,944 + -1.3
986,945 - +0.3
987,388 + ydiO HEPCGN_05570 0.39 +0.5
987,461 - ydiO HEPCGN_05570 0.45 -1.1
987,483 - ydiO HEPCGN_05570 0.47 -0.2
987,528 - ydiO HEPCGN_05570 0.51 +0.5
987,552 - ydiO HEPCGN_05570 0.53 -1.7
987,602 + ydiO HEPCGN_05570 0.57 -0.4
987,602 + ydiO HEPCGN_05570 0.57 -0.3
987,602 + ydiO HEPCGN_05570 0.57 +2.4
987,603 - ydiO HEPCGN_05570 0.57 -1.0
987,603 - ydiO HEPCGN_05570 0.57 +0.0
987,603 - ydiO HEPCGN_05570 0.57 +2.4
987,605 - ydiO HEPCGN_05570 0.57 -0.4
987,605 - ydiO HEPCGN_05570 0.57 +0.4
987,611 - ydiO HEPCGN_05570 0.58 +0.5
987,652 + ydiO HEPCGN_05570 0.62 -0.7
987,776 + ydiO HEPCGN_05570 0.72 +1.4
987,776 + ydiO HEPCGN_05570 0.72 +0.7
987,777 - ydiO HEPCGN_05570 0.72 -0.1
987,777 - ydiO HEPCGN_05570 0.72 -0.7
987,809 + ydiO HEPCGN_05570 0.75 -1.1
987,809 + ydiO HEPCGN_05570 0.75 -0.2
987,810 - ydiO HEPCGN_05570 0.75 +0.8
987,818 + ydiO HEPCGN_05570 0.76 +0.4
987,895 + ydiO HEPCGN_05570 0.83 -0.3
987,896 - ydiO HEPCGN_05570 0.83 +0.4

Or see this region's nucleotide sequence