Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03870

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgp18 and rri1 are separated by 148 nucleotidesrri1 and HEPCGN_03870 overlap by 4 nucleotidesHEPCGN_03870 and HEPCGN_03875 are separated by 60 nucleotides HEPCGN_03860: gp18 - phage minor tail protein L, at 677,179 to 677,877 gp18 HEPCGN_03865: rri1 - phage tail protein, at 678,026 to 678,625 rri1 HEPCGN_03870: HEPCGN_03870 - tail assembly protein, at 678,622 to 679,170 _03870 HEPCGN_03875: HEPCGN_03875 - phage tail protein, at 679,231 to 682,929 _03875 Position (kb) 678 679 680Strain fitness (log2 ratio) -1 0 1at 677.630 kb on + strand, within gp18at 677.677 kb on - strand, within gp18at 677.787 kb on + strand, within gp18at 677.875 kb on + strandat 678.814 kb on - strand, within HEPCGN_03870at 679.248 kb on + strandat 679.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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677,630 + gp18 HEPCGN_03860 0.65 -1.3
677,677 - gp18 HEPCGN_03860 0.71 +0.3
677,787 + gp18 HEPCGN_03860 0.87 +0.1
677,875 + +0.3
678,814 - HEPCGN_03870 0.35 -1.4
679,248 + -0.3
679,516 + -0.9

Or see this region's nucleotide sequence