Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobT and ldtA are separated by 61 nucleotides ldtA and Asn_trna are separated by 55 nucleotides Asn_trna and nac are separated by 326 nucleotides
HEPCGN_03470: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 598,770 to 599,849
cobT
HEPCGN_03475: ldtA - L,D-transpeptidase, at 599,911 to 600,846
ldtA
HEPCGN_03480: Asn_trna - tRNA-Asn(gtt), at 600,902 to 600,977
_trna
HEPCGN_03485: nac - nitrogen assimilation transcriptional regulator NAC, at 601,304 to 602,221
nac
Position (kb) 599
600
601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 598.958 kb on - strand, within cobT at 599.029 kb on + strand, within cobT at 599.030 kb on - strand, within cobT at 599.104 kb on + strand, within cobT at 599.171 kb on + strand, within cobT at 599.239 kb on + strand, within cobT at 599.240 kb on - strand, within cobT at 599.240 kb on - strand, within cobT at 599.240 kb on - strand, within cobT at 599.245 kb on - strand, within cobT at 599.329 kb on + strand, within cobT at 599.365 kb on + strand, within cobT at 599.366 kb on - strand, within cobT at 599.524 kb on + strand, within cobT at 599.524 kb on + strand, within cobT at 599.622 kb on + strand, within cobT at 599.695 kb on - strand, within cobT at 599.703 kb on - strand, within cobT at 599.807 kb on + strand at 599.807 kb on + strand at 599.808 kb on - strand at 599.816 kb on - strand at 599.872 kb on + strand at 599.873 kb on - strand at 599.875 kb on - strand at 599.875 kb on - strand at 599.878 kb on + strand at 599.885 kb on + strand at 599.888 kb on + strand at 599.888 kb on + strand at 600.033 kb on - strand, within ldtA at 600.033 kb on - strand, within ldtA at 600.033 kb on - strand, within ldtA at 600.052 kb on - strand, within ldtA at 600.052 kb on - strand, within ldtA at 600.099 kb on + strand, within ldtA at 600.100 kb on - strand, within ldtA at 600.102 kb on + strand, within ldtA at 600.103 kb on - strand, within ldtA at 600.235 kb on + strand, within ldtA at 600.239 kb on - strand, within ldtA at 600.242 kb on - strand, within ldtA at 600.256 kb on - strand, within ldtA at 600.258 kb on + strand, within ldtA at 600.258 kb on + strand, within ldtA at 600.337 kb on - strand, within ldtA at 600.386 kb on - strand, within ldtA at 600.386 kb on - strand, within ldtA at 600.460 kb on + strand, within ldtA at 600.475 kb on + strand, within ldtA at 600.521 kb on + strand, within ldtA at 600.521 kb on + strand, within ldtA at 600.521 kb on + strand, within ldtA at 600.522 kb on - strand, within ldtA at 600.534 kb on + strand, within ldtA at 600.535 kb on - strand, within ldtA at 600.691 kb on + strand, within ldtA at 600.767 kb on + strand at 600.767 kb on + strand at 601.177 kb on - strand at 601.258 kb on + strand at 601.258 kb on + strand at 601.259 kb on - strand at 601.325 kb on + strand at 601.374 kb on + strand at 601.496 kb on + strand, within nac at 601.518 kb on + strand, within nac at 601.673 kb on + strand, within nac at 601.674 kb on - strand, within nac at 601.674 kb on - strand, within nac at 601.674 kb on - strand, within nac
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 598,958 - cobT HEPCGN_03470 0.17 -0.7 599,029 + cobT HEPCGN_03470 0.24 +1.9 599,030 - cobT HEPCGN_03470 0.24 -0.0 599,104 + cobT HEPCGN_03470 0.31 -1.1 599,171 + cobT HEPCGN_03470 0.37 -0.7 599,239 + cobT HEPCGN_03470 0.43 -0.4 599,240 - cobT HEPCGN_03470 0.44 +0.1 599,240 - cobT HEPCGN_03470 0.44 -0.2 599,240 - cobT HEPCGN_03470 0.44 -0.6 599,245 - cobT HEPCGN_03470 0.44 -1.7 599,329 + cobT HEPCGN_03470 0.52 +0.1 599,365 + cobT HEPCGN_03470 0.55 +0.7 599,366 - cobT HEPCGN_03470 0.55 +0.4 599,524 + cobT HEPCGN_03470 0.70 -0.7 599,524 + cobT HEPCGN_03470 0.70 +1.8 599,622 + cobT HEPCGN_03470 0.79 -0.1 599,695 - cobT HEPCGN_03470 0.86 +0.1 599,703 - cobT HEPCGN_03470 0.86 -0.6 599,807 + +2.5 599,807 + +0.4 599,808 - +1.3 599,816 - -1.5 599,872 + +0.9 599,873 - +0.8 599,875 - -0.1 599,875 - +0.6 599,878 + +1.0 599,885 + -0.0 599,888 + -2.7 599,888 + -1.2 600,033 - ldtA HEPCGN_03475 0.13 +0.5 600,033 - ldtA HEPCGN_03475 0.13 +0.0 600,033 - ldtA HEPCGN_03475 0.13 +0.2 600,052 - ldtA HEPCGN_03475 0.15 -1.1 600,052 - ldtA HEPCGN_03475 0.15 +0.9 600,099 + ldtA HEPCGN_03475 0.20 -0.9 600,100 - ldtA HEPCGN_03475 0.20 -0.9 600,102 + ldtA HEPCGN_03475 0.20 -0.8 600,103 - ldtA HEPCGN_03475 0.21 -0.7 600,235 + ldtA HEPCGN_03475 0.35 -2.4 600,239 - ldtA HEPCGN_03475 0.35 -0.3 600,242 - ldtA HEPCGN_03475 0.35 +1.1 600,256 - ldtA HEPCGN_03475 0.37 -0.3 600,258 + ldtA HEPCGN_03475 0.37 -1.3 600,258 + ldtA HEPCGN_03475 0.37 +0.3 600,337 - ldtA HEPCGN_03475 0.46 -2.2 600,386 - ldtA HEPCGN_03475 0.51 -0.8 600,386 - ldtA HEPCGN_03475 0.51 +0.2 600,460 + ldtA HEPCGN_03475 0.59 -1.4 600,475 + ldtA HEPCGN_03475 0.60 -1.7 600,521 + ldtA HEPCGN_03475 0.65 -0.6 600,521 + ldtA HEPCGN_03475 0.65 +0.0 600,521 + ldtA HEPCGN_03475 0.65 +0.2 600,522 - ldtA HEPCGN_03475 0.65 +0.1 600,534 + ldtA HEPCGN_03475 0.67 -2.2 600,535 - ldtA HEPCGN_03475 0.67 -0.1 600,691 + ldtA HEPCGN_03475 0.83 -0.3 600,767 + +0.5 600,767 + -0.7 601,177 - -0.7 601,258 + +0.7 601,258 + -0.2 601,259 - -0.3 601,325 + +0.8 601,374 + +0.1 601,496 + nac HEPCGN_03485 0.21 +2.0 601,518 + nac HEPCGN_03485 0.23 -0.9 601,673 + nac HEPCGN_03485 0.40 -1.0 601,674 - nac HEPCGN_03485 0.40 +0.2 601,674 - nac HEPCGN_03485 0.40 -0.0 601,674 - nac HEPCGN_03485 0.40 +0.7
Or see this region's nucleotide sequence