Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02760 and yegX are separated by 64 nucleotides yegX and mngR are separated by 51 nucleotides mngR and yegV overlap by 27 nucleotides yegV and HEPCGN_02780 overlap by 4 nucleotides
HEPCGN_02760: HEPCGN_02760 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 462,194 to 462,994
_02760
HEPCGN_02765: yegX - Uncharacterized protein YegX, at 463,059 to 463,877
yegX
HEPCGN_02770: mngR - GntR family transcriptional regulator, at 463,929 to 464,675
mngR
HEPCGN_02775: yegV - Uncharacterized sugar kinase YegV, at 464,649 to 465,614
yegV
HEPCGN_02780: HEPCGN_02780 - ADP-ribosylglycohydrolase family protein, at 465,611 to 466,615
_02780
Position (kb) 463
464
465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 463.001 kb on + strand at 463.004 kb on + strand at 463.005 kb on - strand at 463.005 kb on - strand at 463.005 kb on - strand at 463.005 kb on - strand at 463.007 kb on - strand at 463.117 kb on + strand at 463.165 kb on - strand, within yegX at 463.251 kb on + strand, within yegX at 463.252 kb on - strand, within yegX at 463.268 kb on - strand, within yegX at 463.268 kb on - strand, within yegX at 463.268 kb on - strand, within yegX at 463.352 kb on + strand, within yegX at 463.353 kb on - strand, within yegX at 463.411 kb on + strand, within yegX at 463.411 kb on + strand, within yegX at 463.412 kb on - strand, within yegX at 463.443 kb on + strand, within yegX at 463.450 kb on - strand, within yegX at 463.577 kb on - strand, within yegX at 463.641 kb on + strand, within yegX at 463.681 kb on - strand, within yegX at 463.716 kb on + strand, within yegX at 463.717 kb on - strand, within yegX at 463.717 kb on - strand, within yegX at 463.820 kb on + strand at 463.820 kb on + strand at 463.821 kb on - strand at 463.862 kb on + strand at 463.880 kb on - strand at 463.894 kb on + strand at 463.894 kb on + strand at 464.006 kb on + strand, within mngR at 464.007 kb on - strand, within mngR at 464.063 kb on + strand, within mngR at 464.064 kb on - strand, within mngR at 464.175 kb on + strand, within mngR at 464.371 kb on - strand, within mngR at 464.457 kb on + strand, within mngR at 464.495 kb on + strand, within mngR at 464.546 kb on + strand, within mngR at 464.615 kb on + strand at 464.650 kb on + strand at 464.651 kb on - strand at 464.673 kb on + strand at 464.749 kb on - strand, within yegV at 464.949 kb on + strand, within yegV at 464.950 kb on - strand, within yegV at 464.950 kb on - strand, within yegV at 464.958 kb on + strand, within yegV at 464.958 kb on + strand, within yegV at 464.959 kb on - strand, within yegV at 465.021 kb on + strand, within yegV at 465.176 kb on - strand, within yegV at 465.201 kb on + strand, within yegV at 465.254 kb on + strand, within yegV at 465.254 kb on + strand, within yegV at 465.255 kb on - strand, within yegV at 465.255 kb on - strand, within yegV at 465.334 kb on - strand, within yegV at 465.440 kb on + strand, within yegV at 465.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 463,001 + -0.5 463,004 + +0.3 463,005 - -0.7 463,005 - +0.4 463,005 - +0.4 463,005 - +0.1 463,007 - -0.1 463,117 + -0.2 463,165 - yegX HEPCGN_02765 0.13 +0.5 463,251 + yegX HEPCGN_02765 0.23 +0.1 463,252 - yegX HEPCGN_02765 0.24 -0.3 463,268 - yegX HEPCGN_02765 0.26 -0.7 463,268 - yegX HEPCGN_02765 0.26 -0.1 463,268 - yegX HEPCGN_02765 0.26 +2.0 463,352 + yegX HEPCGN_02765 0.36 -0.7 463,353 - yegX HEPCGN_02765 0.36 -1.2 463,411 + yegX HEPCGN_02765 0.43 -0.3 463,411 + yegX HEPCGN_02765 0.43 +0.8 463,412 - yegX HEPCGN_02765 0.43 +0.3 463,443 + yegX HEPCGN_02765 0.47 -0.5 463,450 - yegX HEPCGN_02765 0.48 -0.9 463,577 - yegX HEPCGN_02765 0.63 +0.6 463,641 + yegX HEPCGN_02765 0.71 -0.1 463,681 - yegX HEPCGN_02765 0.76 -0.0 463,716 + yegX HEPCGN_02765 0.80 +0.1 463,717 - yegX HEPCGN_02765 0.80 -3.2 463,717 - yegX HEPCGN_02765 0.80 +0.0 463,820 + -0.4 463,820 + -0.8 463,821 - +0.4 463,862 + -0.3 463,880 - -0.3 463,894 + -1.4 463,894 + +0.6 464,006 + mngR HEPCGN_02770 0.10 -1.1 464,007 - mngR HEPCGN_02770 0.10 -1.5 464,063 + mngR HEPCGN_02770 0.18 -1.0 464,064 - mngR HEPCGN_02770 0.18 -0.9 464,175 + mngR HEPCGN_02770 0.33 -1.2 464,371 - mngR HEPCGN_02770 0.59 -0.5 464,457 + mngR HEPCGN_02770 0.71 +0.1 464,495 + mngR HEPCGN_02770 0.76 +0.8 464,546 + mngR HEPCGN_02770 0.83 -0.3 464,615 + -0.1 464,650 + -1.8 464,651 - -0.9 464,673 + +0.3 464,749 - yegV HEPCGN_02775 0.10 -0.5 464,949 + yegV HEPCGN_02775 0.31 +1.1 464,950 - yegV HEPCGN_02775 0.31 +0.4 464,950 - yegV HEPCGN_02775 0.31 +0.5 464,958 + yegV HEPCGN_02775 0.32 -0.1 464,958 + yegV HEPCGN_02775 0.32 +1.3 464,959 - yegV HEPCGN_02775 0.32 -1.9 465,021 + yegV HEPCGN_02775 0.39 +0.4 465,176 - yegV HEPCGN_02775 0.55 +0.8 465,201 + yegV HEPCGN_02775 0.57 +0.3 465,254 + yegV HEPCGN_02775 0.63 -0.3 465,254 + yegV HEPCGN_02775 0.63 +0.6 465,255 - yegV HEPCGN_02775 0.63 -0.1 465,255 - yegV HEPCGN_02775 0.63 +0.5 465,334 - yegV HEPCGN_02775 0.71 -0.2 465,440 + yegV HEPCGN_02775 0.82 -0.1 465,577 - -0.9
Or see this region's nucleotide sequence