Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02610

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_02600 and HEPCGN_02605 are separated by 67 nucleotidesHEPCGN_02605 and HEPCGN_02610 are separated by 151 nucleotidesHEPCGN_02610 and HEPCGN_02615 overlap by 4 nucleotidesHEPCGN_02615 and HEPCGN_02620 are separated by 9 nucleotidesHEPCGN_02620 and HEPCGN_02625 are separated by 117 nucleotides HEPCGN_02600: HEPCGN_02600 - phage tail protein, at 419,743 to 423,543 _02600 HEPCGN_02605: HEPCGN_02605 - Ail/Lom family protein, at 423,611 to 424,210 _02605 HEPCGN_02610: HEPCGN_02610 - phage tail protein, at 424,362 to 426,422 _02610 HEPCGN_02615: HEPCGN_02615 - hypothetical protein, at 426,419 to 426,697 _02615 HEPCGN_02620: HEPCGN_02620 - Ybl63, at 426,707 to 427,003 _02620 HEPCGN_02625: HEPCGN_02625 - damage-inducible protein DinI, at 427,121 to 427,369 _02625 Position (kb) 424 425 426 427Strain fitness (log2 ratio) -2 -1 0 1at 426.017 kb on + strand, within HEPCGN_02610at 426.017 kb on + strand, within HEPCGN_02610at 426.138 kb on + strand, within HEPCGN_02610at 426.231 kb on - strandat 426.242 kb on - strandat 426.254 kb on + strandat 426.256 kb on + strandat 426.286 kb on - strandat 426.288 kb on - strandat 426.744 kb on + strand, within HEPCGN_02620at 426.745 kb on - strand, within HEPCGN_02620at 426.809 kb on - strand, within HEPCGN_02620at 427.068 kb on - strandat 427.273 kb on + strand, within HEPCGN_02625at 427.273 kb on + strand, within HEPCGN_02625at 427.274 kb on - strand, within HEPCGN_02625at 427.351 kb on + strandat 427.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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426,017 + HEPCGN_02610 0.80 -0.4
426,017 + HEPCGN_02610 0.80 -0.6
426,138 + HEPCGN_02610 0.86 -1.0
426,231 - -2.3
426,242 - +0.1
426,254 + +0.2
426,256 + -0.1
426,286 - +0.3
426,288 - +0.2
426,744 + HEPCGN_02620 0.12 -0.1
426,745 - HEPCGN_02620 0.13 -1.4
426,809 - HEPCGN_02620 0.34 -0.2
427,068 - -0.5
427,273 + HEPCGN_02625 0.61 +0.9
427,273 + HEPCGN_02625 0.61 +0.2
427,274 - HEPCGN_02625 0.61 -0.3
427,351 + -0.2
427,393 - -0.5

Or see this region's nucleotide sequence