Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27010

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_27000 and HEPCGN_27005 are separated by 60 nucleotidesHEPCGN_27005 and HEPCGN_27010 overlap by 4 nucleotidesHEPCGN_27010 and HEPCGN_27015 are separated by 5 nucleotidesHEPCGN_27015 and HEPCGN_27020 overlap by 1 nucleotides HEPCGN_27000: HEPCGN_27000 - host specificity protein J, at 4,143,610 to 4,147,089 _27000 HEPCGN_27005: HEPCGN_27005 - tail assembly protein, at 4,147,150 to 4,147,722 _27005 HEPCGN_27010: HEPCGN_27010 - phage tail protein, at 4,147,719 to 4,148,462 _27010 HEPCGN_27015: HEPCGN_27015 - phage minor tail protein L, at 4,148,468 to 4,149,166 _27015 HEPCGN_27020: HEPCGN_27020 - phage tail protein, at 4,149,166 to 4,149,495 _27020 Position (kb) 4147 4148 4149Strain fitness (log2 ratio) -1 0 1at 4148.160 kb on - strand, within HEPCGN_27010at 4148.160 kb on - strand, within HEPCGN_27010at 4148.327 kb on - strand, within HEPCGN_27010

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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4,148,160 - HEPCGN_27010 0.59 -0.8
4,148,160 - HEPCGN_27010 0.59 -1.2
4,148,327 - HEPCGN_27010 0.82 -1.6

Or see this region's nucleotide sequence