Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22665

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
3,305,011	-	pdeN	HEPCGN_22660	0.50	-1.4
3,305,011	-	pdeN	HEPCGN_22660	0.50	-1.1
3,305,011	-	pdeN	HEPCGN_22660	0.50	-0.1
3,305,027	+	pdeN	HEPCGN_22660	0.51	+0.8
3,305,028	-	pdeN	HEPCGN_22660	0.51	+0.5
3,305,181	+	pdeN	HEPCGN_22660	0.61	+0.4
3,305,209	-	pdeN	HEPCGN_22660	0.62	+1.1
3,305,212	+	pdeN	HEPCGN_22660	0.63	-1.1
3,305,220	+	pdeN	HEPCGN_22660	0.63	+0.3
3,305,221	-	pdeN	HEPCGN_22660	0.63	+0.3
3,305,223	+	pdeN	HEPCGN_22660	0.63	+2.5
3,305,223	+	pdeN	HEPCGN_22660	0.63	-0.4
3,305,268	+	pdeN	HEPCGN_22660	0.66	-0.4
3,305,268	+	pdeN	HEPCGN_22660	0.66	-0.4
3,305,413	-	pdeN	HEPCGN_22660	0.76	-0.3
3,305,413	-	pdeN	HEPCGN_22660	0.76	-0.7
3,305,415	+	pdeN	HEPCGN_22660	0.76	+0.6
3,305,415	+	pdeN	HEPCGN_22660	0.76	+1.3
3,305,572	-	pdeN	HEPCGN_22660	0.86	-0.1
3,305,575	+	pdeN	HEPCGN_22660	0.86	+1.6
3,305,575	+	pdeN	HEPCGN_22660	0.86	+0.3
3,305,575	+	pdeN	HEPCGN_22660	0.86	+0.5
3,305,682	+				+1.7
3,305,683	-				+0.0
3,305,751	+				-0.2
3,305,751	+				-2.6
3,305,763	+				-0.2
3,305,764	-				-0.5
3,305,764	-				-0.1
3,305,785	+				+0.1
3,305,787	+				-0.1
3,305,788	-				-1.5
3,305,788	-				-1.4
3,305,788	-				+0.6
3,305,835	+				+0.7
3,305,850	+				-0.3
3,305,852	+				-0.1
3,306,046	-	mepS	HEPCGN_22665	0.13	-0.9
3,306,140	-	mepS	HEPCGN_22665	0.29	-1.9
3,306,302	-	mepS	HEPCGN_22665	0.58	-0.8
3,306,320	+	mepS	HEPCGN_22665	0.61	-1.1
3,306,320	+	mepS	HEPCGN_22665	0.61	+0.3
3,306,321	-	mepS	HEPCGN_22665	0.61	-1.7
3,306,460	-	mepS	HEPCGN_22665	0.86	-0.5
3,306,510	+				-0.3
3,306,511	-				-1.9
3,306,511	-				-0.6
3,306,511	-				+0.1
3,306,576	+				-1.3
3,306,610	+				-1.5
3,306,614	+				-0.5
3,306,672	+				+0.5
3,306,816	-				+0.1
3,306,850	-				-0.2
3,306,877	-				-1.2
3,306,939	+				-1.0
3,306,940	-				-0.1
3,306,944	-				+0.7
3,307,022	-				-0.0
3,307,352	-	lpxT	HEPCGN_22670	0.56	-1.5
3,307,354	+	lpxT	HEPCGN_22670	0.56	-1.4
3,307,367	-	lpxT	HEPCGN_22670	0.58	+1.2
3,307,367	-	lpxT	HEPCGN_22670	0.58	-1.0
3,307,369	+	lpxT	HEPCGN_22670	0.58	+0.3
3,307,386	+	lpxT	HEPCGN_22670	0.61	-0.6
3,307,396	-	lpxT	HEPCGN_22670	0.62	-0.5
3,307,447	-	lpxT	HEPCGN_22670	0.69	-0.7