Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15210

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
1,804,459	-	hdeD	HEPCGN_15200	0.53	-0.9
1,804,720	+				-0.3
1,804,721	-				-0.6
1,804,722	+				+0.2
1,804,723	-				-0.6
1,804,825	+				+0.0
1,805,227	+	hdeA	HEPCGN_15205	0.74	+1.1
1,805,365	+				+2.0
1,805,375	-				+0.1
1,805,399	+				-0.3
1,805,400	-				-0.7
1,805,617	+	hdeB	HEPCGN_15210	0.59	-1.8
1,805,619	+	hdeB	HEPCGN_15210	0.59	-0.9
1,805,621	+	hdeB	HEPCGN_15210	0.60	-0.1
1,805,622	-	hdeB	HEPCGN_15210	0.60	-1.2
1,805,927	-				-0.3
1,805,930	-				-0.3
1,805,970	+	yhiD	HEPCGN_15215	0.14	+0.4
1,806,097	+	yhiD	HEPCGN_15215	0.36	-0.0
1,806,098	-	yhiD	HEPCGN_15215	0.36	-0.6
1,806,161	+	yhiD	HEPCGN_15215	0.47	+1.7
1,806,166	-	yhiD	HEPCGN_15215	0.48	-0.8
1,806,181	-	yhiD	HEPCGN_15215	0.50	+1.5
1,806,259	+	yhiD	HEPCGN_15215	0.64	-0.6
1,806,272	-	yhiD	HEPCGN_15215	0.66	-0.6
1,806,406	+	yhiD	HEPCGN_15215	0.89	-1.8
1,806,461	+				-1.3
1,806,473	-				+2.4
1,806,473	-				-0.7
1,806,474	+				+0.4
1,806,564	-				-0.8
1,806,567	+				+0.5
1,806,615	+	chuV	HEPCGN_15220	0.12	-0.6
1,806,615	+	chuV	HEPCGN_15220	0.12	-0.6
1,806,615	+	chuV	HEPCGN_15220	0.12	-1.4
1,806,661	-	chuV	HEPCGN_15220	0.18	-2.0
1,806,664	-	chuV	HEPCGN_15220	0.19	+0.8
1,806,753	+	chuV	HEPCGN_15220	0.30	+1.6