Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12005

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
1,139,953	+				+0.3
1,139,953	+				-0.3
1,139,965	+				-1.2
1,139,965	+				+0.2
1,139,965	+				+0.2
1,139,966	-				+0.1
1,139,990	+				+0.9
1,139,991	-				-0.7
1,139,991	-				+0.3
1,139,998	-				-0.4
1,140,264	+	nudC	HEPCGN_12000	0.40	-0.4
1,140,270	-	nudC	HEPCGN_12000	0.40	+1.0
1,140,338	+	nudC	HEPCGN_12000	0.49	-0.2
1,140,443	-	nudC	HEPCGN_12000	0.63	-0.0
1,140,443	-	nudC	HEPCGN_12000	0.63	+0.9
1,140,443	-	nudC	HEPCGN_12000	0.63	-0.4
1,140,443	-	nudC	HEPCGN_12000	0.63	+0.1
1,140,474	+	nudC	HEPCGN_12000	0.67	+0.5
1,140,475	-	nudC	HEPCGN_12000	0.67	+0.2
1,140,475	-	nudC	HEPCGN_12000	0.67	+0.4
1,140,529	-	nudC	HEPCGN_12000	0.74	-1.6
1,140,529	-	nudC	HEPCGN_12000	0.74	-1.0
1,140,562	-	nudC	HEPCGN_12000	0.78	+0.1
1,140,562	-	nudC	HEPCGN_12000	0.78	+0.3
1,140,564	+	nudC	HEPCGN_12000	0.78	+2.0
1,140,643	+	nudC	HEPCGN_12000	0.89	+0.4
1,140,643	+	nudC	HEPCGN_12000	0.89	-0.8
1,140,720	+				-0.6
1,140,721	-				+1.4
1,140,723	-				-1.4
1,140,731	+				+0.1
1,140,731	+				-2.9
1,140,731	+				+0.1
1,140,731	+				+0.7
1,140,732	-				+0.8
1,140,766	+				+0.1
1,140,767	-				+1.4
1,140,831	+				+1.0
1,140,832	-				+0.9
1,140,832	-				+1.3
1,140,894	-	rsd	HEPCGN_12005	0.14	+0.6
1,140,899	+	rsd	HEPCGN_12005	0.15	+1.6
1,140,899	+	rsd	HEPCGN_12005	0.15	+0.8
1,140,899	+	rsd	HEPCGN_12005	0.15	+0.7
1,140,899	+	rsd	HEPCGN_12005	0.15	+1.3
1,140,899	+	rsd	HEPCGN_12005	0.15	+1.5
1,140,900	-	rsd	HEPCGN_12005	0.16	+0.8
1,140,900	-	rsd	HEPCGN_12005	0.16	+1.7
1,140,900	-	rsd	HEPCGN_12005	0.16	+1.2
1,140,903	+	rsd	HEPCGN_12005	0.16	+1.2
1,140,922	+	rsd	HEPCGN_12005	0.20	+1.1
1,140,923	-	rsd	HEPCGN_12005	0.20	+0.4
1,140,923	-	rsd	HEPCGN_12005	0.20	+1.0
1,140,926	-	rsd	HEPCGN_12005	0.21	+1.4
1,140,942	+	rsd	HEPCGN_12005	0.24	+1.9
1,141,015	+	rsd	HEPCGN_12005	0.40	+1.4
1,141,016	-	rsd	HEPCGN_12005	0.40	+1.2
1,141,038	+	rsd	HEPCGN_12005	0.44	+1.2
1,141,042	+	rsd	HEPCGN_12005	0.45	+1.2
1,141,141	+	rsd	HEPCGN_12005	0.66	+1.2
1,141,179	+	rsd	HEPCGN_12005	0.74	+1.5
1,141,183	+	rsd	HEPCGN_12005	0.75	+1.1
1,141,183	+	rsd	HEPCGN_12005	0.75	+1.6
1,141,184	-	rsd	HEPCGN_12005	0.75	+1.6
1,141,328	-				+0.3
1,141,421	+				-0.4
1,141,424	+				-0.3
1,141,425	-				+1.4
1,141,534	+				-1.8
1,141,534	+				-0.2
1,141,534	+				-0.6
1,141,534	+				-1.0
1,141,534	+				-1.1
1,141,534	+				-1.3
1,141,534	+				-0.5
1,141,535	-				+0.3
1,141,535	-				+0.1
1,141,535	-				-0.5
1,141,588	+				+0.5
1,141,634	+				+1.1
1,141,634	+				-1.1
1,141,634	+				-1.2
1,141,635	-				+0.2
1,141,635	-				-0.4
1,141,754	+	thiC	HEPCGN_12010	0.12	-0.3
1,141,864	+	thiC	HEPCGN_12010	0.17	+1.2
1,141,883	+	thiC	HEPCGN_12010	0.18	-0.4
1,141,883	+	thiC	HEPCGN_12010	0.18	+0.7
1,141,883	+	thiC	HEPCGN_12010	0.18	+0.5
1,141,938	+	thiC	HEPCGN_12010	0.21	-0.2
1,141,939	-	thiC	HEPCGN_12010	0.21	-1.5
1,142,061	+	thiC	HEPCGN_12010	0.28	+0.5
1,142,061	+	thiC	HEPCGN_12010	0.28	-0.4
1,142,062	-	thiC	HEPCGN_12010	0.28	+0.0
1,142,066	-	thiC	HEPCGN_12010	0.28	+0.0
1,142,076	+	thiC	HEPCGN_12010	0.29	-0.3