Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiM and yjiL are separated by 9 nucleotides yjiL and HEPCGN_09500 overlap by 4 nucleotides HEPCGN_09500 and yjiK overlap by 47 nucleotides yjiK and HEPCGN_09510 are separated by 67 nucleotides
HEPCGN_09490: yjiM - Putative dehydratase subunit YjiM, at 641,968 to 643,119
yjiM
HEPCGN_09495: yjiL - Uncharacterized protein YjiL, at 643,129 to 643,896
yjiL
HEPCGN_09500: HEPCGN_09500 - Putative Se/S carrier protein-like, at 643,893 to 644,150
_09500
HEPCGN_09505: yjiK - Uncharacterized protein YjiK, at 644,104 to 645,075
yjiK
HEPCGN_09510: HEPCGN_09510 - Major facilitator superfamily protein, at 645,143 to 645,877
_09510
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 642.947 kb on + strand, within yjiM at 642.980 kb on - strand, within yjiM at 642.980 kb on - strand, within yjiM at 643.003 kb on - strand, within yjiM at 643.036 kb on + strand at 643.036 kb on + strand at 643.038 kb on + strand at 643.039 kb on - strand at 643.057 kb on + strand at 643.136 kb on - strand at 643.182 kb on - strand at 643.248 kb on + strand, within yjiL at 643.248 kb on + strand, within yjiL at 643.461 kb on + strand, within yjiL at 643.602 kb on + strand, within yjiL at 643.613 kb on + strand, within yjiL at 643.613 kb on + strand, within yjiL at 643.613 kb on + strand, within yjiL at 643.614 kb on - strand, within yjiL at 643.752 kb on + strand, within yjiL at 643.782 kb on + strand, within yjiL at 643.902 kb on + strand at 643.912 kb on + strand at 643.937 kb on - strand, within HEPCGN_09500 at 644.148 kb on + strand at 644.159 kb on + strand at 644.175 kb on - strand at 644.175 kb on - strand at 644.203 kb on - strand, within yjiK at 644.391 kb on + strand, within yjiK at 644.392 kb on - strand, within yjiK at 644.434 kb on - strand, within yjiK at 644.439 kb on + strand, within yjiK at 644.587 kb on + strand, within yjiK at 644.765 kb on + strand, within yjiK at 644.766 kb on - strand, within yjiK at 644.766 kb on - strand, within yjiK at 644.769 kb on + strand, within yjiK at 644.822 kb on + strand, within yjiK at 644.863 kb on - strand, within yjiK at 644.943 kb on - strand, within yjiK at 645.019 kb on + strand at 645.019 kb on + strand at 645.019 kb on + strand at 645.020 kb on - strand at 645.073 kb on + strand at 645.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 642,947 + yjiM HEPCGN_09490 0.85 -0.4 642,980 - yjiM HEPCGN_09490 0.88 -2.2 642,980 - yjiM HEPCGN_09490 0.88 -0.3 643,003 - yjiM HEPCGN_09490 0.90 +0.6 643,036 + +0.3 643,036 + -0.3 643,038 + -0.3 643,039 - -0.1 643,057 + +0.2 643,136 - +0.1 643,182 - -1.5 643,248 + yjiL HEPCGN_09495 0.15 +0.7 643,248 + yjiL HEPCGN_09495 0.15 -0.3 643,461 + yjiL HEPCGN_09495 0.43 +0.5 643,602 + yjiL HEPCGN_09495 0.62 -1.0 643,613 + yjiL HEPCGN_09495 0.63 -1.4 643,613 + yjiL HEPCGN_09495 0.63 -0.2 643,613 + yjiL HEPCGN_09495 0.63 -0.0 643,614 - yjiL HEPCGN_09495 0.63 +0.2 643,752 + yjiL HEPCGN_09495 0.81 -0.7 643,782 + yjiL HEPCGN_09495 0.85 -0.2 643,902 + -0.4 643,912 + -0.0 643,937 - HEPCGN_09500 0.17 -1.1 644,148 + +0.4 644,159 + +1.3 644,175 - +0.7 644,175 - -0.4 644,203 - yjiK HEPCGN_09505 0.10 +0.4 644,391 + yjiK HEPCGN_09505 0.30 -0.9 644,392 - yjiK HEPCGN_09505 0.30 -0.0 644,434 - yjiK HEPCGN_09505 0.34 -0.3 644,439 + yjiK HEPCGN_09505 0.34 +0.1 644,587 + yjiK HEPCGN_09505 0.50 -0.8 644,765 + yjiK HEPCGN_09505 0.68 +0.6 644,766 - yjiK HEPCGN_09505 0.68 +1.0 644,766 - yjiK HEPCGN_09505 0.68 -0.5 644,769 + yjiK HEPCGN_09505 0.68 +0.1 644,822 + yjiK HEPCGN_09505 0.74 -0.3 644,863 - yjiK HEPCGN_09505 0.78 +1.1 644,943 - yjiK HEPCGN_09505 0.86 +0.6 645,019 + -0.4 645,019 + +0.7 645,019 + +0.9 645,020 - +0.4 645,073 + +0.5 645,139 - +0.3
Or see this region's nucleotide sequence