Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmA and rbsB are separated by 48 nucleotides rbsB and yhfF are separated by 250 nucleotides yhfF and yahJ are separated by 297 nucleotides
HEPCGN_07530: ccmA - heme ABC exporter ATP-binding protein CcmA, at 244,409 to 245,893
ccmA
HEPCGN_07535: rbsB - LacI family transcriptional regulator, at 245,942 to 246,928
rbsB
HEPCGN_07540: yhfF - ASCH domain-containing protein, at 247,179 to 247,589
yhfF
HEPCGN_07545: yahJ - Uncharacterized protein YahJ, at 247,887 to 249,269
yahJ
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 245.080 kb on + strand, within ccmA at 245.081 kb on - strand, within ccmA at 245.110 kb on + strand, within ccmA at 245.167 kb on - strand, within ccmA at 245.358 kb on - strand, within ccmA at 245.509 kb on + strand, within ccmA at 245.510 kb on - strand, within ccmA at 245.637 kb on + strand, within ccmA at 245.812 kb on + strand at 245.812 kb on + strand at 245.943 kb on + strand at 245.978 kb on + strand at 245.978 kb on + strand at 245.979 kb on - strand at 245.981 kb on + strand at 245.981 kb on + strand at 245.982 kb on - strand at 245.982 kb on - strand at 245.982 kb on - strand at 246.013 kb on + strand at 246.013 kb on + strand at 246.014 kb on - strand at 246.017 kb on + strand at 246.106 kb on - strand, within rbsB at 246.131 kb on - strand, within rbsB at 246.131 kb on - strand, within rbsB at 246.158 kb on - strand, within rbsB at 246.196 kb on - strand, within rbsB at 246.377 kb on - strand, within rbsB at 246.422 kb on + strand, within rbsB at 246.423 kb on - strand, within rbsB at 246.448 kb on + strand, within rbsB at 246.508 kb on - strand, within rbsB at 246.508 kb on - strand, within rbsB at 246.554 kb on - strand, within rbsB at 246.655 kb on + strand, within rbsB at 246.656 kb on - strand, within rbsB at 246.659 kb on - strand, within rbsB at 246.659 kb on - strand, within rbsB at 246.763 kb on + strand, within rbsB at 246.809 kb on - strand, within rbsB at 246.821 kb on - strand, within rbsB at 246.901 kb on + strand at 247.168 kb on + strand at 247.173 kb on - strand at 247.234 kb on + strand, within yhfF at 247.402 kb on - strand, within yhfF at 247.409 kb on + strand, within yhfF at 247.409 kb on + strand, within yhfF at 247.409 kb on + strand, within yhfF at 247.410 kb on - strand, within yhfF at 247.445 kb on + strand, within yhfF at 247.538 kb on + strand, within yhfF at 247.791 kb on + strand at 247.844 kb on + strand at 247.854 kb on - strand at 247.872 kb on + strand at 247.873 kb on - strand at 247.873 kb on - strand at 247.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 245,080 + ccmA HEPCGN_07530 0.45 -0.1 245,081 - ccmA HEPCGN_07530 0.45 -1.3 245,110 + ccmA HEPCGN_07530 0.47 +0.3 245,167 - ccmA HEPCGN_07530 0.51 +0.9 245,358 - ccmA HEPCGN_07530 0.64 +0.8 245,509 + ccmA HEPCGN_07530 0.74 -0.2 245,510 - ccmA HEPCGN_07530 0.74 +0.4 245,637 + ccmA HEPCGN_07530 0.83 +0.1 245,812 + -1.2 245,812 + +0.3 245,943 + +0.4 245,978 + +0.3 245,978 + +1.6 245,979 - -1.7 245,981 + -0.3 245,981 + +2.7 245,982 - +0.1 245,982 - +1.3 245,982 - -0.3 246,013 + -0.7 246,013 + +0.4 246,014 - -0.2 246,017 + -0.5 246,106 - rbsB HEPCGN_07535 0.17 -0.4 246,131 - rbsB HEPCGN_07535 0.19 -1.2 246,131 - rbsB HEPCGN_07535 0.19 +0.1 246,158 - rbsB HEPCGN_07535 0.22 -0.5 246,196 - rbsB HEPCGN_07535 0.26 +0.2 246,377 - rbsB HEPCGN_07535 0.44 -0.6 246,422 + rbsB HEPCGN_07535 0.49 +0.3 246,423 - rbsB HEPCGN_07535 0.49 -0.2 246,448 + rbsB HEPCGN_07535 0.51 +1.6 246,508 - rbsB HEPCGN_07535 0.57 -0.0 246,508 - rbsB HEPCGN_07535 0.57 -0.2 246,554 - rbsB HEPCGN_07535 0.62 -2.4 246,655 + rbsB HEPCGN_07535 0.72 -0.1 246,656 - rbsB HEPCGN_07535 0.72 +0.3 246,659 - rbsB HEPCGN_07535 0.73 -2.0 246,659 - rbsB HEPCGN_07535 0.73 +0.0 246,763 + rbsB HEPCGN_07535 0.83 +0.6 246,809 - rbsB HEPCGN_07535 0.88 +0.4 246,821 - rbsB HEPCGN_07535 0.89 +0.7 246,901 + +2.4 247,168 + +0.5 247,173 - -1.3 247,234 + yhfF HEPCGN_07540 0.13 -0.4 247,402 - yhfF HEPCGN_07540 0.54 +0.8 247,409 + yhfF HEPCGN_07540 0.56 +0.7 247,409 + yhfF HEPCGN_07540 0.56 -0.4 247,409 + yhfF HEPCGN_07540 0.56 +0.3 247,410 - yhfF HEPCGN_07540 0.56 +0.3 247,445 + yhfF HEPCGN_07540 0.65 -0.2 247,538 + yhfF HEPCGN_07540 0.87 +0.1 247,791 + -0.8 247,844 + -0.5 247,854 - -0.3 247,872 + +2.9 247,873 - -0.5 247,873 - +0.8 247,886 - +0.1
Or see this region's nucleotide sequence