Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyoB and cyoC overlap by 11 nucleotides cyoC and cyoD overlap by 1 nucleotides cyoD and cyoE are separated by 11 nucleotides
HEPCGN_06980: cyoB - cytochrome o ubiquinol oxidase subunit I, at 132,599 to 134,590
cyoB
HEPCGN_06985: cyoC - cytochrome o ubiquinol oxidase subunit III, at 134,580 to 135,194
cyoC
HEPCGN_06990: cyoD - cytochrome o ubiquinol oxidase subunit III, at 135,194 to 135,523
cyoD
HEPCGN_06995: cyoE - heme o synthase, at 135,535 to 136,425
cyoE
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.249 kb on - strand, within cyoB at 134.337 kb on - strand, within cyoB at 134.337 kb on - strand, within cyoB at 134.351 kb on - strand, within cyoB at 134.425 kb on + strand at 134.504 kb on + strand at 134.507 kb on + strand at 134.507 kb on + strand at 134.560 kb on + strand at 134.561 kb on - strand at 134.592 kb on - strand at 134.702 kb on + strand, within cyoC at 134.714 kb on + strand, within cyoC at 134.714 kb on + strand, within cyoC at 134.715 kb on - strand, within cyoC at 134.715 kb on - strand, within cyoC at 134.715 kb on - strand, within cyoC at 134.718 kb on + strand, within cyoC at 134.932 kb on - strand, within cyoC at 134.932 kb on - strand, within cyoC at 135.175 kb on - strand at 135.192 kb on + strand at 135.192 kb on + strand at 135.193 kb on - strand at 135.246 kb on - strand, within cyoD at 135.327 kb on + strand, within cyoD at 135.471 kb on + strand, within cyoD at 135.504 kb on - strand at 135.504 kb on - strand at 135.504 kb on - strand at 135.543 kb on + strand at 135.543 kb on + strand at 135.544 kb on - strand at 135.655 kb on + strand, within cyoE at 135.828 kb on + strand, within cyoE at 135.829 kb on - strand, within cyoE at 135.893 kb on - strand, within cyoE at 135.906 kb on + strand, within cyoE at 135.906 kb on + strand, within cyoE at 136.067 kb on - strand, within cyoE at 136.097 kb on - strand, within cyoE at 136.169 kb on - strand, within cyoE at 136.169 kb on - strand, within cyoE at 136.169 kb on - strand, within cyoE at 136.171 kb on - strand, within cyoE at 136.227 kb on + strand, within cyoE at 136.232 kb on - strand, within cyoE at 136.232 kb on - strand, within cyoE at 136.232 kb on - strand, within cyoE at 136.272 kb on + strand, within cyoE at 136.289 kb on - strand, within cyoE at 136.290 kb on + strand, within cyoE at 136.384 kb on - strand at 136.401 kb on + strand at 136.423 kb on + strand at 136.427 kb on - strand at 136.427 kb on - strand at 136.490 kb on + strand at 136.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 134,249 - cyoB HEPCGN_06980 0.83 -0.3 134,337 - cyoB HEPCGN_06980 0.87 -1.1 134,337 - cyoB HEPCGN_06980 0.87 -0.3 134,351 - cyoB HEPCGN_06980 0.88 -0.2 134,425 + -2.3 134,504 + -0.2 134,507 + -0.7 134,507 + +0.6 134,560 + +0.2 134,561 - -1.6 134,592 - +0.3 134,702 + cyoC HEPCGN_06985 0.20 -0.6 134,714 + cyoC HEPCGN_06985 0.22 +1.0 134,714 + cyoC HEPCGN_06985 0.22 -0.2 134,715 - cyoC HEPCGN_06985 0.22 +0.8 134,715 - cyoC HEPCGN_06985 0.22 +0.6 134,715 - cyoC HEPCGN_06985 0.22 +0.5 134,718 + cyoC HEPCGN_06985 0.22 +0.2 134,932 - cyoC HEPCGN_06985 0.57 -0.2 134,932 - cyoC HEPCGN_06985 0.57 +0.2 135,175 - -0.2 135,192 + -0.9 135,192 + -1.3 135,193 - -0.4 135,246 - cyoD HEPCGN_06990 0.16 -1.1 135,327 + cyoD HEPCGN_06990 0.40 -2.9 135,471 + cyoD HEPCGN_06990 0.84 -2.7 135,504 - -2.3 135,504 - -2.2 135,504 - -1.5 135,543 + -0.5 135,543 + -0.5 135,544 - -0.9 135,655 + cyoE HEPCGN_06995 0.13 -0.1 135,828 + cyoE HEPCGN_06995 0.33 -0.8 135,829 - cyoE HEPCGN_06995 0.33 -0.1 135,893 - cyoE HEPCGN_06995 0.40 -0.2 135,906 + cyoE HEPCGN_06995 0.42 +0.2 135,906 + cyoE HEPCGN_06995 0.42 -0.9 136,067 - cyoE HEPCGN_06995 0.60 -0.8 136,097 - cyoE HEPCGN_06995 0.63 -0.2 136,169 - cyoE HEPCGN_06995 0.71 -0.0 136,169 - cyoE HEPCGN_06995 0.71 -0.3 136,169 - cyoE HEPCGN_06995 0.71 +0.7 136,171 - cyoE HEPCGN_06995 0.71 +0.7 136,227 + cyoE HEPCGN_06995 0.78 -1.3 136,232 - cyoE HEPCGN_06995 0.78 -0.4 136,232 - cyoE HEPCGN_06995 0.78 -0.7 136,232 - cyoE HEPCGN_06995 0.78 -0.5 136,272 + cyoE HEPCGN_06995 0.83 +1.1 136,289 - cyoE HEPCGN_06995 0.85 -0.1 136,290 + cyoE HEPCGN_06995 0.85 -0.4 136,384 - +0.5 136,401 + -0.3 136,423 + -0.7 136,427 - -1.1 136,427 - +1.8 136,490 + -0.5 136,500 - -0.4
Or see this region's nucleotide sequence