Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05505

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroH and ppsR are separated by 156 nucleotidesppsR and ppsA are separated by 331 nucleotides HEPCGN_05500: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 971,693 to 972,739 aroH HEPCGN_05505: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 972,896 to 973,729 ppsR HEPCGN_05510: ppsA - phosphoenolpyruvate synthase, at 974,061 to 976,439 ppsA Position (kb) 972 973 974Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 971.970 kb on - strand, within aroHat 972.047 kb on - strand, within aroHat 972.050 kb on - strand, within aroHat 972.050 kb on - strand, within aroHat 972.081 kb on + strand, within aroHat 972.081 kb on + strand, within aroHat 972.081 kb on + strand, within aroHat 972.082 kb on - strand, within aroHat 972.082 kb on - strand, within aroHat 972.082 kb on - strand, within aroHat 972.082 kb on - strand, within aroHat 972.121 kb on + strand, within aroHat 972.121 kb on + strand, within aroHat 972.121 kb on + strand, within aroHat 972.122 kb on - strand, within aroHat 972.247 kb on + strand, within aroHat 972.386 kb on + strand, within aroHat 972.397 kb on + strand, within aroHat 972.528 kb on + strand, within aroHat 972.590 kb on - strand, within aroHat 972.606 kb on - strand, within aroHat 972.925 kb on + strandat 972.968 kb on - strandat 972.999 kb on + strand, within ppsRat 973.000 kb on - strand, within ppsRat 973.051 kb on - strand, within ppsRat 973.162 kb on + strand, within ppsRat 973.224 kb on + strand, within ppsRat 973.224 kb on + strand, within ppsRat 973.354 kb on - strand, within ppsRat 973.367 kb on - strand, within ppsRat 973.370 kb on - strand, within ppsRat 973.518 kb on + strand, within ppsRat 973.552 kb on - strand, within ppsRat 973.616 kb on - strand, within ppsRat 973.696 kb on + strandat 973.770 kb on + strandat 973.801 kb on + strandat 973.814 kb on + strandat 974.005 kb on + strandat 974.099 kb on + strandat 974.122 kb on + strandat 974.168 kb on + strandat 974.282 kb on + strandat 974.394 kb on + strand, within ppsAat 974.548 kb on + strand, within ppsAat 974.549 kb on - strand, within ppsAat 974.549 kb on - strand, within ppsAat 974.583 kb on + strand, within ppsAat 974.584 kb on - strand, within ppsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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971,970 - aroH HEPCGN_05500 0.26 -1.2
972,047 - aroH HEPCGN_05500 0.34 -0.6
972,050 - aroH HEPCGN_05500 0.34 +0.3
972,050 - aroH HEPCGN_05500 0.34 -0.1
972,081 + aroH HEPCGN_05500 0.37 -2.6
972,081 + aroH HEPCGN_05500 0.37 +0.4
972,081 + aroH HEPCGN_05500 0.37 -0.8
972,082 - aroH HEPCGN_05500 0.37 -0.3
972,082 - aroH HEPCGN_05500 0.37 +0.5
972,082 - aroH HEPCGN_05500 0.37 +0.1
972,082 - aroH HEPCGN_05500 0.37 +0.6
972,121 + aroH HEPCGN_05500 0.41 -0.8
972,121 + aroH HEPCGN_05500 0.41 -0.2
972,121 + aroH HEPCGN_05500 0.41 -3.3
972,122 - aroH HEPCGN_05500 0.41 -0.3
972,247 + aroH HEPCGN_05500 0.53 -1.6
972,386 + aroH HEPCGN_05500 0.66 -0.2
972,397 + aroH HEPCGN_05500 0.67 -1.4
972,528 + aroH HEPCGN_05500 0.80 +0.3
972,590 - aroH HEPCGN_05500 0.86 -0.3
972,606 - aroH HEPCGN_05500 0.87 -1.5
972,925 + -0.4
972,968 - -0.3
972,999 + ppsR HEPCGN_05505 0.12 -1.7
973,000 - ppsR HEPCGN_05505 0.12 +0.3
973,051 - ppsR HEPCGN_05505 0.19 -2.2
973,162 + ppsR HEPCGN_05505 0.32 -0.9
973,224 + ppsR HEPCGN_05505 0.39 -2.5
973,224 + ppsR HEPCGN_05505 0.39 -0.5
973,354 - ppsR HEPCGN_05505 0.55 +0.3
973,367 - ppsR HEPCGN_05505 0.56 -1.2
973,370 - ppsR HEPCGN_05505 0.57 -2.3
973,518 + ppsR HEPCGN_05505 0.75 -1.9
973,552 - ppsR HEPCGN_05505 0.79 -0.9
973,616 - ppsR HEPCGN_05505 0.86 -1.3
973,696 + +0.4
973,770 + -1.4
973,801 + +0.3
973,814 + -0.3
974,005 + +0.8
974,099 + +1.9
974,122 + +0.5
974,168 + +0.4
974,282 + +2.1
974,394 + ppsA HEPCGN_05510 0.14 +0.5
974,548 + ppsA HEPCGN_05510 0.20 +0.4
974,549 - ppsA HEPCGN_05510 0.21 +0.0
974,549 - ppsA HEPCGN_05510 0.21 -2.0
974,583 + ppsA HEPCGN_05510 0.22 -1.6
974,584 - ppsA HEPCGN_05510 0.22 +0.2

Or see this region's nucleotide sequence