Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04460

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrP and yecH are separated by 190 nucleotidesyecH and ftnA are separated by 37 nucleotidesftnA and yecR are separated by 171 nucleotides HEPCGN_04455: tyrP - tyrosine transporter TyrP, at 775,047 to 776,258 tyrP HEPCGN_04460: yecH - Uncharacterized protein YecH, at 776,449 to 776,688 yecH HEPCGN_04465: ftnA - non-heme ferritin, at 776,726 to 777,223 ftnA HEPCGN_04470: yecR - Uncharacterized protein YecR, at 777,395 to 777,718 yecR Position (kb) 776 777Strain fitness (log2 ratio) -2 -1 0 1 2at 775.509 kb on - strand, within tyrPat 775.545 kb on - strand, within tyrPat 775.604 kb on + strand, within tyrPat 775.642 kb on + strand, within tyrPat 775.643 kb on - strand, within tyrPat 775.653 kb on - strand, within tyrPat 775.774 kb on - strand, within tyrPat 775.774 kb on - strand, within tyrPat 775.914 kb on - strand, within tyrPat 775.967 kb on - strand, within tyrPat 775.985 kb on - strand, within tyrPat 775.985 kb on - strand, within tyrPat 776.001 kb on - strand, within tyrPat 776.101 kb on - strand, within tyrPat 776.283 kb on + strandat 776.297 kb on - strandat 776.358 kb on + strandat 776.408 kb on - strandat 776.427 kb on - strandat 776.458 kb on - strandat 776.481 kb on + strand, within yecHat 776.482 kb on - strand, within yecHat 776.508 kb on + strand, within yecHat 776.536 kb on - strand, within yecHat 776.728 kb on - strandat 776.802 kb on - strand, within ftnAat 776.856 kb on + strand, within ftnAat 777.046 kb on - strand, within ftnAat 777.126 kb on + strand, within ftnAat 777.127 kb on - strand, within ftnAat 777.243 kb on + strandat 777.302 kb on + strandat 777.461 kb on + strand, within yecRat 777.461 kb on + strand, within yecRat 777.462 kb on - strand, within yecRat 777.520 kb on + strand, within yecRat 777.606 kb on + strand, within yecRat 777.617 kb on - strand, within yecRat 777.622 kb on + strand, within yecRat 777.623 kb on - strand, within yecRat 777.623 kb on - strand, within yecRat 777.671 kb on - strand, within yecRat 777.671 kb on - strand, within yecRat 777.671 kb on - strand, within yecR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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775,509 - tyrP HEPCGN_04455 0.38 +0.5
775,545 - tyrP HEPCGN_04455 0.41 -0.6
775,604 + tyrP HEPCGN_04455 0.46 +1.1
775,642 + tyrP HEPCGN_04455 0.49 -1.7
775,643 - tyrP HEPCGN_04455 0.49 -1.4
775,653 - tyrP HEPCGN_04455 0.50 -0.5
775,774 - tyrP HEPCGN_04455 0.60 +1.8
775,774 - tyrP HEPCGN_04455 0.60 -2.1
775,914 - tyrP HEPCGN_04455 0.72 +0.5
775,967 - tyrP HEPCGN_04455 0.76 +1.6
775,985 - tyrP HEPCGN_04455 0.77 +0.2
775,985 - tyrP HEPCGN_04455 0.77 -1.1
776,001 - tyrP HEPCGN_04455 0.79 -0.9
776,101 - tyrP HEPCGN_04455 0.87 -0.2
776,283 + +2.0
776,297 - +1.1
776,358 + +1.2
776,408 - +0.4
776,427 - +0.4
776,458 - -1.1
776,481 + yecH HEPCGN_04460 0.13 +0.3
776,482 - yecH HEPCGN_04460 0.14 -0.1
776,508 + yecH HEPCGN_04460 0.25 -1.4
776,536 - yecH HEPCGN_04460 0.36 -1.2
776,728 - -0.4
776,802 - ftnA HEPCGN_04465 0.15 -0.7
776,856 + ftnA HEPCGN_04465 0.26 -0.3
777,046 - ftnA HEPCGN_04465 0.64 -0.2
777,126 + ftnA HEPCGN_04465 0.80 -0.5
777,127 - ftnA HEPCGN_04465 0.81 +0.5
777,243 + +0.1
777,302 + +1.1
777,461 + yecR HEPCGN_04470 0.20 +0.8
777,461 + yecR HEPCGN_04470 0.20 +0.1
777,462 - yecR HEPCGN_04470 0.21 +0.0
777,520 + yecR HEPCGN_04470 0.39 +0.2
777,606 + yecR HEPCGN_04470 0.65 +0.1
777,617 - yecR HEPCGN_04470 0.69 +0.3
777,622 + yecR HEPCGN_04470 0.70 -0.1
777,623 - yecR HEPCGN_04470 0.70 -1.0
777,623 - yecR HEPCGN_04470 0.70 +1.0
777,671 - yecR HEPCGN_04470 0.85 +1.9
777,671 - yecR HEPCGN_04470 0.85 +0.5
777,671 - yecR HEPCGN_04470 0.85 +0.8

Or see this region's nucleotide sequence