Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gatZ and gatA are separated by 9 nucleotides gatA and gatB are separated by 30 nucleotides gatB and gatB are separated by 3 nucleotides gatB and gatD are separated by 47 nucleotides
HEPCGN_02800: gatZ - tagatose-bisphosphate aldolase subunit GatZ, at 470,310 to 471,572
gatZ
HEPCGN_02805: gatA - PTS galactitol transporter subunit IIA, at 471,582 to 472,034
gatA
HEPCGN_02810: gatB - PTS galactitol transporter subunit IIB, at 472,065 to 472,349
gatB
HEPCGN_02815: gatB - PTS galactitol transporter subunit IIB, at 472,353 to 473,708
gatB
HEPCGN_02820: gatD - galactitol-1-phosphate 5-dehydrogenase, at 473,756 to 474,796
gatD
Position (kb) 472
473
474 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 471.518 kb on + strand at 471.581 kb on + strand at 471.802 kb on - strand, within gatA at 471.809 kb on - strand, within gatA at 472.012 kb on - strand at 472.112 kb on + strand, within gatB at 472.520 kb on - strand, within gatB at 472.695 kb on - strand, within gatB at 472.708 kb on + strand, within gatB at 472.709 kb on - strand, within gatB at 472.718 kb on + strand, within gatB at 472.827 kb on - strand, within gatB at 472.886 kb on + strand, within gatB at 472.908 kb on + strand, within gatB at 472.908 kb on + strand, within gatB at 472.909 kb on - strand, within gatB at 472.911 kb on - strand, within gatB at 472.911 kb on - strand, within gatB at 472.940 kb on + strand, within gatB at 472.940 kb on + strand, within gatB at 472.940 kb on + strand, within gatB at 472.940 kb on + strand, within gatB at 473.090 kb on - strand, within gatB at 473.150 kb on + strand, within gatB at 473.150 kb on + strand, within gatB at 473.151 kb on - strand, within gatB at 473.198 kb on - strand, within gatB at 473.475 kb on - strand, within gatB at 473.529 kb on - strand, within gatB at 473.866 kb on - strand, within gatD at 473.979 kb on + strand, within gatD at 474.250 kb on + strand, within gatD at 474.253 kb on + strand, within gatD at 474.334 kb on + strand, within gatD at 474.334 kb on + strand, within gatD at 474.415 kb on - strand, within gatD at 474.623 kb on + strand, within gatD at 474.624 kb on - strand, within gatD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 471,518 + -0.2 471,581 + +0.3 471,802 - gatA HEPCGN_02805 0.49 -0.3 471,809 - gatA HEPCGN_02805 0.50 -0.6 472,012 - +0.7 472,112 + gatB HEPCGN_02810 0.16 +0.2 472,520 - gatB HEPCGN_02815 0.12 -0.5 472,695 - gatB HEPCGN_02815 0.25 +0.3 472,708 + gatB HEPCGN_02815 0.26 +0.8 472,709 - gatB HEPCGN_02815 0.26 -1.0 472,718 + gatB HEPCGN_02815 0.27 -0.2 472,827 - gatB HEPCGN_02815 0.35 -0.1 472,886 + gatB HEPCGN_02815 0.39 -0.6 472,908 + gatB HEPCGN_02815 0.41 -0.2 472,908 + gatB HEPCGN_02815 0.41 -0.7 472,909 - gatB HEPCGN_02815 0.41 -0.6 472,911 - gatB HEPCGN_02815 0.41 -0.2 472,911 - gatB HEPCGN_02815 0.41 -0.4 472,940 + gatB HEPCGN_02815 0.43 +0.1 472,940 + gatB HEPCGN_02815 0.43 -0.6 472,940 + gatB HEPCGN_02815 0.43 -0.4 472,940 + gatB HEPCGN_02815 0.43 -1.2 473,090 - gatB HEPCGN_02815 0.54 +0.2 473,150 + gatB HEPCGN_02815 0.59 -0.8 473,150 + gatB HEPCGN_02815 0.59 -0.1 473,151 - gatB HEPCGN_02815 0.59 +0.5 473,198 - gatB HEPCGN_02815 0.62 +4.1 473,475 - gatB HEPCGN_02815 0.83 +0.1 473,529 - gatB HEPCGN_02815 0.87 -0.3 473,866 - gatD HEPCGN_02820 0.11 -0.8 473,979 + gatD HEPCGN_02820 0.21 -0.2 474,250 + gatD HEPCGN_02820 0.47 -1.2 474,253 + gatD HEPCGN_02820 0.48 -0.0 474,334 + gatD HEPCGN_02820 0.56 +0.2 474,334 + gatD HEPCGN_02820 0.56 +0.6 474,415 - gatD HEPCGN_02820 0.63 -0.5 474,623 + gatD HEPCGN_02820 0.83 -0.3 474,624 - gatD HEPCGN_02820 0.83 -0.3
Or see this region's nucleotide sequence