Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02300 and HEPCGN_02305 overlap by 14 nucleotides HEPCGN_02305 and HEPCGN_02310 overlap by 47 nucleotides HEPCGN_02310 and HEPCGN_02315 overlap by 11 nucleotides HEPCGN_02315 and HEPCGN_02320 are separated by 10 nucleotides HEPCGN_02320 and HEPCGN_02325 are separated by 5 nucleotides HEPCGN_02325 and HEPCGN_02330 are separated by 194 nucleotides HEPCGN_02330 and HEPCGN_02335 are separated by 128 nucleotides
HEPCGN_02300: HEPCGN_02300 - ead/Ea22-like family protein, at 381,490 to 382,176
_02300
HEPCGN_02305: HEPCGN_02305 - hypothetical protein, at 382,163 to 382,477
_02305
HEPCGN_02310: HEPCGN_02310 - DUF4752 domain-containing protein, at 382,431 to 382,748
_02310
HEPCGN_02315: HEPCGN_02315 - MarR family transcriptional regulator, at 382,738 to 382,986
_02315
HEPCGN_02320: HEPCGN_02320 - hypothetical protein, at 382,997 to 383,578
_02320
HEPCGN_02325: HEPCGN_02325 - hypothetical protein, at 383,584 to 383,772
_02325
HEPCGN_02330: HEPCGN_02330 - hypothetical protein, at 383,967 to 384,332
_02330
HEPCGN_02335: HEPCGN_02335 - transcriptional regulator, at 384,461 to 384,964
_02335
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.079 kb on + strand, within HEPCGN_02300 at 382.101 kb on + strand, within HEPCGN_02300 at 382.104 kb on + strand, within HEPCGN_02300 at 382.104 kb on + strand, within HEPCGN_02300 at 382.105 kb on - strand, within HEPCGN_02300 at 382.105 kb on - strand, within HEPCGN_02300 at 382.106 kb on + strand, within HEPCGN_02300 at 382.107 kb on - strand, within HEPCGN_02300 at 382.260 kb on + strand, within HEPCGN_02305 at 382.261 kb on - strand, within HEPCGN_02305 at 382.286 kb on - strand, within HEPCGN_02305 at 382.393 kb on - strand, within HEPCGN_02305 at 382.441 kb on - strand at 382.498 kb on - strand, within HEPCGN_02310 at 382.506 kb on + strand, within HEPCGN_02310 at 382.509 kb on + strand, within HEPCGN_02310 at 382.728 kb on + strand at 382.761 kb on + strand at 382.787 kb on - strand, within HEPCGN_02315 at 383.033 kb on - strand at 383.254 kb on - strand, within HEPCGN_02320 at 383.406 kb on - strand, within HEPCGN_02320 at 383.406 kb on - strand, within HEPCGN_02320 at 383.443 kb on + strand, within HEPCGN_02320 at 383.461 kb on + strand, within HEPCGN_02320 at 383.462 kb on - strand, within HEPCGN_02320 at 383.496 kb on - strand, within HEPCGN_02320 at 383.917 kb on - strand at 384.066 kb on - strand, within HEPCGN_02330 at 384.243 kb on + strand, within HEPCGN_02330 at 384.350 kb on + strand at 384.350 kb on + strand at 384.351 kb on - strand at 384.364 kb on + strand at 384.364 kb on + strand at 384.367 kb on - strand at 384.433 kb on + strand at 384.457 kb on + strand at 384.572 kb on - strand, within HEPCGN_02335
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 382,079 + HEPCGN_02300 0.86 +0.9 382,101 + HEPCGN_02300 0.89 -0.4 382,104 + HEPCGN_02300 0.89 -0.4 382,104 + HEPCGN_02300 0.89 -0.6 382,105 - HEPCGN_02300 0.90 -0.7 382,105 - HEPCGN_02300 0.90 -2.3 382,106 + HEPCGN_02300 0.90 -2.7 382,107 - HEPCGN_02300 0.90 -0.4 382,260 + HEPCGN_02305 0.31 -0.1 382,261 - HEPCGN_02305 0.31 +0.3 382,286 - HEPCGN_02305 0.39 +0.2 382,393 - HEPCGN_02305 0.73 -0.7 382,441 - +1.3 382,498 - HEPCGN_02310 0.21 -1.5 382,506 + HEPCGN_02310 0.24 +0.5 382,509 + HEPCGN_02310 0.25 +0.1 382,728 + +1.3 382,761 + -0.7 382,787 - HEPCGN_02315 0.20 -3.7 383,033 - -2.7 383,254 - HEPCGN_02320 0.44 -1.8 383,406 - HEPCGN_02320 0.70 -1.0 383,406 - HEPCGN_02320 0.70 -0.3 383,443 + HEPCGN_02320 0.77 -1.4 383,461 + HEPCGN_02320 0.80 -2.5 383,462 - HEPCGN_02320 0.80 -0.4 383,496 - HEPCGN_02320 0.86 -0.5 383,917 - +0.2 384,066 - HEPCGN_02330 0.27 +0.2 384,243 + HEPCGN_02330 0.75 -0.0 384,350 + -0.3 384,350 + -0.2 384,351 - -0.5 384,364 + +2.1 384,364 + +0.6 384,367 - +0.3 384,433 + -1.0 384,457 + -0.5 384,572 - HEPCGN_02335 0.22 +2.2
Or see this region's nucleotide sequence