Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00355 and HEPCGN_00360 are separated by 56 nucleotides HEPCGN_00360 and HEPCGN_00365 are separated by 132 nucleotides HEPCGN_00365 and HEPCGN_00370 are separated by 1 nucleotides HEPCGN_00370 and HEPCGN_00375 are separated by 69 nucleotides
HEPCGN_00355: HEPCGN_00355 - head decoration protein, at 21 to 353
_00355
HEPCGN_00360: HEPCGN_00360 - Capsid protein, at 410 to 685
_00360
HEPCGN_00365: HEPCGN_00365 - integrase, at 818 to 2,053
_00365
HEPCGN_00370: HEPCGN_00370 - Prophage CP4-57 regulatory protein (AlpA), at 2,055 to 2,282
_00370
HEPCGN_00375: HEPCGN_00375 - hypothetical protein, at 2,352 to 2,888
_00375
Position (kb) 0
1
2
3 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.009 kb on + strand at 0.009 kb on + strand at 0.009 kb on + strand at 0.020 kb on + strand at 0.246 kb on + strand, within HEPCGN_00355 at 0.246 kb on + strand, within HEPCGN_00355 at 0.357 kb on + strand at 0.371 kb on - strand at 0.419 kb on + strand at 0.658 kb on - strand at 0.861 kb on - strand at 0.931 kb on + strand at 0.931 kb on + strand at 0.932 kb on - strand at 0.959 kb on + strand, within HEPCGN_00365 at 0.959 kb on + strand, within HEPCGN_00365 at 1.011 kb on - strand, within HEPCGN_00365 at 1.149 kb on + strand, within HEPCGN_00365 at 1.174 kb on + strand, within HEPCGN_00365 at 1.174 kb on + strand, within HEPCGN_00365 at 1.186 kb on + strand, within HEPCGN_00365 at 1.187 kb on - strand, within HEPCGN_00365 at 1.235 kb on + strand, within HEPCGN_00365 at 1.235 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.270 kb on - strand, within HEPCGN_00365 at 1.328 kb on + strand, within HEPCGN_00365 at 1.515 kb on + strand, within HEPCGN_00365 at 1.558 kb on - strand, within HEPCGN_00365 at 1.558 kb on - strand, within HEPCGN_00365 at 1.736 kb on + strand, within HEPCGN_00365 at 1.760 kb on - strand, within HEPCGN_00365 at 1.770 kb on + strand, within HEPCGN_00365 at 1.828 kb on - strand, within HEPCGN_00365 at 1.852 kb on + strand, within HEPCGN_00365 at 1.860 kb on + strand, within HEPCGN_00365 at 1.883 kb on + strand, within HEPCGN_00365 at 1.884 kb on - strand, within HEPCGN_00365 at 1.935 kb on - strand at 1.991 kb on + strand at 2.000 kb on - strand at 2.095 kb on - strand, within HEPCGN_00370 at 2.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 9 + -1.5 9 + -0.6 9 + +1.8 20 + +0.3 246 + HEPCGN_00355 0.68 +0.1 246 + HEPCGN_00355 0.68 -1.0 357 + -0.9 371 - +0.2 419 + -3.2 658 - -0.3 861 - +0.1 931 + -0.9 931 + -1.4 932 - +0.7 959 + HEPCGN_00365 0.11 -0.6 959 + HEPCGN_00365 0.11 +1.7 1,011 - HEPCGN_00365 0.16 -0.3 1,149 + HEPCGN_00365 0.27 -0.9 1,174 + HEPCGN_00365 0.29 -0.1 1,174 + HEPCGN_00365 0.29 -0.2 1,186 + HEPCGN_00365 0.30 -1.0 1,187 - HEPCGN_00365 0.30 +0.6 1,235 + HEPCGN_00365 0.34 -0.9 1,235 + HEPCGN_00365 0.34 -0.5 1,269 + HEPCGN_00365 0.36 +0.4 1,269 + HEPCGN_00365 0.36 -1.6 1,269 + HEPCGN_00365 0.36 -0.1 1,269 + HEPCGN_00365 0.36 -0.1 1,270 - HEPCGN_00365 0.37 +0.4 1,328 + HEPCGN_00365 0.41 -0.5 1,515 + HEPCGN_00365 0.56 +0.2 1,558 - HEPCGN_00365 0.60 -0.7 1,558 - HEPCGN_00365 0.60 -0.2 1,736 + HEPCGN_00365 0.74 -0.8 1,760 - HEPCGN_00365 0.76 -0.8 1,770 + HEPCGN_00365 0.77 -1.6 1,828 - HEPCGN_00365 0.82 -0.2 1,852 + HEPCGN_00365 0.84 +0.0 1,860 + HEPCGN_00365 0.84 -0.6 1,883 + HEPCGN_00365 0.86 -0.8 1,884 - HEPCGN_00365 0.86 +1.3 1,935 - -0.5 1,991 + -0.4 2,000 - +0.2 2,095 - HEPCGN_00370 0.18 +0.6 2,388 + +0.9
Or see this region's nucleotide sequence