Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exeA and HEPCGN_24575 are separated by 2 nucleotides HEPCGN_24575 and HEPCGN_24580 are separated by 27 nucleotides HEPCGN_24580 and HEPCGN_24585 are separated by 97 nucleotides HEPCGN_24585 and HEPCGN_24590 overlap by 4 nucleotides HEPCGN_24590 and HEPCGN_24595 are separated by 9 nucleotides HEPCGN_24595 and HEPCGN_24600 are separated by 14 nucleotides
HEPCGN_24570: exeA - AAA domain-containing protein, at 3,673,616 to 3,674,782
exeA
HEPCGN_24575: HEPCGN_24575 - hypothetical protein, at 3,674,785 to 3,675,054
_24575
HEPCGN_24580: HEPCGN_24580 - host-nuclease inhibitor protein Gam, at 3,675,082 to 3,675,612
_24580
HEPCGN_24585: HEPCGN_24585 - hypothetical protein, at 3,675,710 to 3,675,904
_24585
HEPCGN_24590: HEPCGN_24590 - hypothetical protein, at 3,675,901 to 3,676,173
_24590
HEPCGN_24595: HEPCGN_24595 - hypothetical protein, at 3,676,183 to 3,676,479
_24595
HEPCGN_24600: HEPCGN_24600 - hypothetical protein, at 3,676,494 to 3,676,709
_24600
Position (kb)
3675
3676 Strain fitness (log2 ratio)
-1
0
1
2 at 3674.116 kb on + strand, within exeA at 3674.116 kb on + strand, within exeA at 3674.116 kb on + strand, within exeA at 3674.117 kb on - strand, within exeA at 3674.117 kb on - strand, within exeA at 3674.156 kb on + strand, within exeA at 3674.156 kb on + strand, within exeA at 3674.157 kb on - strand, within exeA at 3674.603 kb on - strand, within exeA at 3674.628 kb on + strand, within exeA at 3674.780 kb on + strand at 3674.780 kb on + strand at 3674.780 kb on + strand at 3674.867 kb on + strand, within HEPCGN_24575 at 3674.867 kb on + strand, within HEPCGN_24575 at 3674.867 kb on + strand, within HEPCGN_24575 at 3674.959 kb on + strand, within HEPCGN_24575 at 3674.990 kb on - strand, within HEPCGN_24575 at 3675.111 kb on + strand at 3675.112 kb on - strand at 3675.112 kb on - strand at 3675.501 kb on + strand, within HEPCGN_24580 at 3675.501 kb on + strand, within HEPCGN_24580 at 3675.745 kb on - strand, within HEPCGN_24585 at 3675.952 kb on + strand, within HEPCGN_24590 at 3676.598 kb on - strand, within HEPCGN_24600
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 3,674,116 + exeA HEPCGN_24570 0.43 -0.4 3,674,116 + exeA HEPCGN_24570 0.43 -1.4 3,674,116 + exeA HEPCGN_24570 0.43 +1.0 3,674,117 - exeA HEPCGN_24570 0.43 -0.1 3,674,117 - exeA HEPCGN_24570 0.43 -0.2 3,674,156 + exeA HEPCGN_24570 0.46 +0.3 3,674,156 + exeA HEPCGN_24570 0.46 -0.1 3,674,157 - exeA HEPCGN_24570 0.46 -0.7 3,674,603 - exeA HEPCGN_24570 0.85 -0.4 3,674,628 + exeA HEPCGN_24570 0.87 +1.4 3,674,780 + -1.5 3,674,780 + +0.5 3,674,780 + +1.6 3,674,867 + HEPCGN_24575 0.30 +1.2 3,674,867 + HEPCGN_24575 0.30 +1.2 3,674,867 + HEPCGN_24575 0.30 +2.1 3,674,959 + HEPCGN_24575 0.64 +0.2 3,674,990 - HEPCGN_24575 0.76 +0.1 3,675,111 + -1.3 3,675,112 - -0.0 3,675,112 - +0.2 3,675,501 + HEPCGN_24580 0.79 -1.4 3,675,501 + HEPCGN_24580 0.79 -0.4 3,675,745 - HEPCGN_24585 0.18 +0.8 3,675,952 + HEPCGN_24590 0.19 +0.5 3,676,598 - HEPCGN_24600 0.48 -0.1
Or see this region's nucleotide sequence