Strain Fitness in Escherichia coli ECOR38 around HEPCGN_24580

Experiment: TP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntexeA and HEPCGN_24575 are separated by 2 nucleotidesHEPCGN_24575 and HEPCGN_24580 are separated by 27 nucleotidesHEPCGN_24580 and HEPCGN_24585 are separated by 97 nucleotidesHEPCGN_24585 and HEPCGN_24590 overlap by 4 nucleotidesHEPCGN_24590 and HEPCGN_24595 are separated by 9 nucleotidesHEPCGN_24595 and HEPCGN_24600 are separated by 14 nucleotides HEPCGN_24570: exeA - AAA domain-containing protein, at 3,673,616 to 3,674,782 exeA HEPCGN_24575: HEPCGN_24575 - hypothetical protein, at 3,674,785 to 3,675,054 _24575 HEPCGN_24580: HEPCGN_24580 - host-nuclease inhibitor protein Gam, at 3,675,082 to 3,675,612 _24580 HEPCGN_24585: HEPCGN_24585 - hypothetical protein, at 3,675,710 to 3,675,904 _24585 HEPCGN_24590: HEPCGN_24590 - hypothetical protein, at 3,675,901 to 3,676,173 _24590 HEPCGN_24595: HEPCGN_24595 - hypothetical protein, at 3,676,183 to 3,676,479 _24595 HEPCGN_24600: HEPCGN_24600 - hypothetical protein, at 3,676,494 to 3,676,709 _24600 Position (kb) 3675 3676Strain fitness (log2 ratio) -1 0 1 2at 3674.116 kb on + strand, within exeAat 3674.116 kb on + strand, within exeAat 3674.116 kb on + strand, within exeAat 3674.117 kb on - strand, within exeAat 3674.117 kb on - strand, within exeAat 3674.156 kb on + strand, within exeAat 3674.156 kb on + strand, within exeAat 3674.157 kb on - strand, within exeAat 3674.603 kb on - strand, within exeAat 3674.628 kb on + strand, within exeAat 3674.780 kb on + strandat 3674.780 kb on + strandat 3674.780 kb on + strandat 3674.867 kb on + strand, within HEPCGN_24575at 3674.867 kb on + strand, within HEPCGN_24575at 3674.867 kb on + strand, within HEPCGN_24575at 3674.959 kb on + strand, within HEPCGN_24575at 3674.990 kb on - strand, within HEPCGN_24575at 3675.111 kb on + strandat 3675.112 kb on - strandat 3675.112 kb on - strandat 3675.501 kb on + strand, within HEPCGN_24580at 3675.501 kb on + strand, within HEPCGN_24580at 3675.745 kb on - strand, within HEPCGN_24585at 3675.952 kb on + strand, within HEPCGN_24590at 3676.598 kb on - strand, within HEPCGN_24600

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Per-strain Table

Position Strand Gene LocusTag Fraction TP15
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3,674,116 + exeA HEPCGN_24570 0.43 -0.4
3,674,116 + exeA HEPCGN_24570 0.43 -1.4
3,674,116 + exeA HEPCGN_24570 0.43 +1.0
3,674,117 - exeA HEPCGN_24570 0.43 -0.1
3,674,117 - exeA HEPCGN_24570 0.43 -0.2
3,674,156 + exeA HEPCGN_24570 0.46 +0.3
3,674,156 + exeA HEPCGN_24570 0.46 -0.1
3,674,157 - exeA HEPCGN_24570 0.46 -0.7
3,674,603 - exeA HEPCGN_24570 0.85 -0.4
3,674,628 + exeA HEPCGN_24570 0.87 +1.4
3,674,780 + -1.5
3,674,780 + +0.5
3,674,780 + +1.6
3,674,867 + HEPCGN_24575 0.30 +1.2
3,674,867 + HEPCGN_24575 0.30 +1.2
3,674,867 + HEPCGN_24575 0.30 +2.1
3,674,959 + HEPCGN_24575 0.64 +0.2
3,674,990 - HEPCGN_24575 0.76 +0.1
3,675,111 + -1.3
3,675,112 - -0.0
3,675,112 - +0.2
3,675,501 + HEPCGN_24580 0.79 -1.4
3,675,501 + HEPCGN_24580 0.79 -0.4
3,675,745 - HEPCGN_24585 0.18 +0.8
3,675,952 + HEPCGN_24590 0.19 +0.5
3,676,598 - HEPCGN_24600 0.48 -0.1

Or see this region's nucleotide sequence