Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aldB and yiaW are separated by 544 nucleotides yiaW and yiaV are separated by 5 nucleotides
HEPCGN_14700: aldB - aldehyde dehydrogenase AldB, at 1,698,705 to 1,700,243
aldB
HEPCGN_14705: yiaW - Inner membrane protein YiaW, at 1,700,788 to 1,701,111
yiaW
HEPCGN_14710: yiaV - Inner membrane protein YiaV, at 1,701,117 to 1,702,253
yiaV
Position (kb) 1700
1701
1702 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 1699.869 kb on + strand, within aldB at 1699.869 kb on + strand, within aldB at 1699.904 kb on + strand, within aldB at 1700.004 kb on + strand, within aldB at 1700.005 kb on - strand, within aldB at 1700.049 kb on + strand, within aldB at 1700.049 kb on + strand, within aldB at 1700.051 kb on + strand, within aldB at 1700.051 kb on + strand, within aldB at 1700.051 kb on + strand, within aldB at 1700.245 kb on - strand at 1700.246 kb on + strand at 1700.300 kb on - strand at 1700.300 kb on - strand at 1700.300 kb on - strand at 1700.340 kb on + strand at 1700.341 kb on - strand at 1700.392 kb on - strand at 1700.397 kb on + strand at 1700.397 kb on + strand at 1700.503 kb on - strand at 1700.548 kb on + strand at 1700.549 kb on - strand at 1701.047 kb on + strand, within yiaW at 1701.112 kb on + strand at 1701.112 kb on + strand at 1701.113 kb on - strand at 1701.113 kb on - strand at 1701.141 kb on + strand at 1701.168 kb on - strand at 1701.244 kb on + strand, within yiaV at 1701.276 kb on - strand, within yiaV at 1701.388 kb on + strand, within yiaV at 1701.461 kb on + strand, within yiaV at 1701.461 kb on + strand, within yiaV at 1701.759 kb on + strand, within yiaV at 1701.760 kb on - strand, within yiaV at 1701.760 kb on - strand, within yiaV at 1701.762 kb on - strand, within yiaV at 1701.802 kb on - strand, within yiaV at 1701.834 kb on + strand, within yiaV at 1701.835 kb on - strand, within yiaV at 1701.835 kb on - strand, within yiaV at 1701.872 kb on + strand, within yiaV at 1701.959 kb on - strand, within yiaV at 1701.962 kb on + strand, within yiaV at 1702.032 kb on + strand, within yiaV
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 1,699,869 + aldB HEPCGN_14700 0.76 +4.8 1,699,869 + aldB HEPCGN_14700 0.76 -0.1 1,699,904 + aldB HEPCGN_14700 0.78 +0.1 1,700,004 + aldB HEPCGN_14700 0.84 -0.3 1,700,005 - aldB HEPCGN_14700 0.84 -0.8 1,700,049 + aldB HEPCGN_14700 0.87 +0.8 1,700,049 + aldB HEPCGN_14700 0.87 +0.5 1,700,051 + aldB HEPCGN_14700 0.87 -0.2 1,700,051 + aldB HEPCGN_14700 0.87 -0.4 1,700,051 + aldB HEPCGN_14700 0.87 -0.1 1,700,245 - -1.0 1,700,246 + +0.9 1,700,300 - -0.5 1,700,300 - -0.7 1,700,300 - +0.2 1,700,340 + +0.5 1,700,341 - -0.0 1,700,392 - +0.2 1,700,397 + -0.1 1,700,397 + -0.5 1,700,503 - -1.0 1,700,548 + -1.7 1,700,549 - -0.4 1,701,047 + yiaW HEPCGN_14705 0.80 -0.8 1,701,112 + -0.6 1,701,112 + -0.7 1,701,113 - -0.6 1,701,113 - +2.1 1,701,141 + +0.9 1,701,168 - -2.5 1,701,244 + yiaV HEPCGN_14710 0.11 -0.8 1,701,276 - yiaV HEPCGN_14710 0.14 -0.0 1,701,388 + yiaV HEPCGN_14710 0.24 +0.0 1,701,461 + yiaV HEPCGN_14710 0.30 -0.4 1,701,461 + yiaV HEPCGN_14710 0.30 -0.6 1,701,759 + yiaV HEPCGN_14710 0.56 -1.1 1,701,760 - yiaV HEPCGN_14710 0.57 +0.2 1,701,760 - yiaV HEPCGN_14710 0.57 +1.8 1,701,762 - yiaV HEPCGN_14710 0.57 -0.7 1,701,802 - yiaV HEPCGN_14710 0.60 -1.8 1,701,834 + yiaV HEPCGN_14710 0.63 +1.4 1,701,835 - yiaV HEPCGN_14710 0.63 +0.2 1,701,835 - yiaV HEPCGN_14710 0.63 -0.2 1,701,872 + yiaV HEPCGN_14710 0.66 -0.9 1,701,959 - yiaV HEPCGN_14710 0.74 +0.5 1,701,962 + yiaV HEPCGN_14710 0.74 -0.1 1,702,032 + yiaV HEPCGN_14710 0.80 +0.1
Or see this region's nucleotide sequence