Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crfC and yjdM are separated by 400 nucleotides yjdM and yjdN are separated by 159 nucleotides yjdN and HEPCGN_11255 overlap by 90 nucleotides HEPCGN_11255 and phnC are separated by 99 nucleotides
HEPCGN_11235: crfC - clamp-binding protein CrfC, at 988,490 to 990,718
crfC
HEPCGN_11240: yjdM - Protein YjdM, at 991,119 to 991,454
yjdM
HEPCGN_11250: yjdN - VOC family metalloprotein YjdN, at 991,614 to 991,967
yjdN
HEPCGN_11255: HEPCGN_11255 - hypothetical protein, at 991,878 to 992,090
_11255
HEPCGN_11260: phnC - phosphonate ABC transporter ATP-binding protein, at 992,190 to 992,978
phnC
Position (kb) 991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 990.181 kb on + strand, within crfC at 990.198 kb on + strand, within crfC at 990.202 kb on - strand, within crfC at 990.238 kb on + strand, within crfC at 990.250 kb on + strand, within crfC at 990.251 kb on - strand, within crfC at 990.260 kb on + strand, within crfC at 990.287 kb on - strand, within crfC at 990.287 kb on - strand, within crfC at 990.395 kb on - strand, within crfC at 990.571 kb on + strand at 990.587 kb on + strand at 991.048 kb on + strand at 991.049 kb on - strand at 991.049 kb on - strand at 991.126 kb on + strand at 991.155 kb on + strand, within yjdM at 991.161 kb on + strand, within yjdM at 991.162 kb on - strand, within yjdM at 991.180 kb on - strand, within yjdM at 991.201 kb on - strand, within yjdM at 991.322 kb on + strand, within yjdM at 991.458 kb on + strand at 991.621 kb on + strand at 991.622 kb on - strand at 991.668 kb on + strand, within yjdN at 991.679 kb on + strand, within yjdN at 991.679 kb on + strand, within yjdN at 991.679 kb on + strand, within yjdN at 991.679 kb on + strand, within yjdN at 991.680 kb on - strand, within yjdN at 991.701 kb on + strand, within yjdN at 991.703 kb on + strand, within yjdN at 991.704 kb on - strand, within yjdN at 991.841 kb on + strand, within yjdN at 991.841 kb on + strand, within yjdN at 991.842 kb on - strand, within yjdN at 991.842 kb on - strand, within yjdN at 991.843 kb on + strand, within yjdN at 991.874 kb on + strand, within yjdN at 992.102 kb on + strand at 992.127 kb on + strand at 992.330 kb on - strand, within phnC
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 990,181 + crfC HEPCGN_11235 0.76 -1.4 990,198 + crfC HEPCGN_11235 0.77 +3.2 990,202 - crfC HEPCGN_11235 0.77 -0.3 990,238 + crfC HEPCGN_11235 0.78 +0.7 990,250 + crfC HEPCGN_11235 0.79 -0.4 990,251 - crfC HEPCGN_11235 0.79 +0.0 990,260 + crfC HEPCGN_11235 0.79 +0.1 990,287 - crfC HEPCGN_11235 0.81 -0.3 990,287 - crfC HEPCGN_11235 0.81 -0.1 990,395 - crfC HEPCGN_11235 0.85 -1.1 990,571 + +0.1 990,587 + +0.1 991,048 + -1.3 991,049 - +0.6 991,049 - +0.6 991,126 + +0.2 991,155 + yjdM HEPCGN_11240 0.11 -0.6 991,161 + yjdM HEPCGN_11240 0.12 -1.3 991,162 - yjdM HEPCGN_11240 0.13 -0.3 991,180 - yjdM HEPCGN_11240 0.18 -3.2 991,201 - yjdM HEPCGN_11240 0.24 +0.4 991,322 + yjdM HEPCGN_11240 0.60 -0.8 991,458 + -1.9 991,621 + -0.6 991,622 - +0.0 991,668 + yjdN HEPCGN_11250 0.15 +0.5 991,679 + yjdN HEPCGN_11250 0.18 +0.2 991,679 + yjdN HEPCGN_11250 0.18 +0.3 991,679 + yjdN HEPCGN_11250 0.18 +0.2 991,679 + yjdN HEPCGN_11250 0.18 +1.3 991,680 - yjdN HEPCGN_11250 0.19 +0.3 991,701 + yjdN HEPCGN_11250 0.25 -0.9 991,703 + yjdN HEPCGN_11250 0.25 -1.5 991,704 - yjdN HEPCGN_11250 0.25 -0.2 991,841 + yjdN HEPCGN_11250 0.64 -0.7 991,841 + yjdN HEPCGN_11250 0.64 +0.1 991,842 - yjdN HEPCGN_11250 0.64 -0.3 991,842 - yjdN HEPCGN_11250 0.64 +0.2 991,843 + yjdN HEPCGN_11250 0.65 +0.5 991,874 + yjdN HEPCGN_11250 0.73 +0.7 992,102 + -0.2 992,127 + -0.5 992,330 - phnC HEPCGN_11260 0.18 +0.8
Or see this region's nucleotide sequence