Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frdA and frdB overlap by 8 nucleotides frdB and HEPCGN_10580 are separated by 10 nucleotides HEPCGN_10580 and frdD are separated by 10 nucleotides frdD and blaEC are separated by 62 nucleotides
HEPCGN_10570: frdA - fumarate reductase (quinol) flavoprotein subunit, at 857,188 to 858,996
frdA
HEPCGN_10575: frdB - fumarate reductase iron-sulfur protein, at 858,989 to 859,723
frdB
HEPCGN_10580: HEPCGN_10580 - Fumarate reductase subunit C, at 859,734 to 860,129
_10580
HEPCGN_10585: frdD - fumarate reductase subunit FrdD, at 860,140 to 860,499
frdD
HEPCGN_10590: blaEC - BlaEC family class C beta-lactamase, at 860,562 to 861,695
blaEC
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 858.741 kb on + strand, within frdA at 858.742 kb on - strand, within frdA at 858.765 kb on + strand, within frdA at 858.765 kb on + strand, within frdA at 858.900 kb on + strand at 858.900 kb on + strand at 858.903 kb on + strand at 858.918 kb on + strand at 858.954 kb on + strand at 858.973 kb on - strand at 859.058 kb on - strand at 859.067 kb on + strand, within frdB at 859.068 kb on - strand, within frdB at 859.068 kb on - strand, within frdB at 859.098 kb on + strand, within frdB at 859.116 kb on - strand, within frdB at 859.222 kb on + strand, within frdB at 859.242 kb on - strand, within frdB at 859.269 kb on + strand, within frdB at 859.269 kb on + strand, within frdB at 859.273 kb on + strand, within frdB at 859.384 kb on + strand, within frdB at 859.384 kb on + strand, within frdB at 859.385 kb on - strand, within frdB at 859.416 kb on - strand, within frdB at 859.454 kb on + strand, within frdB at 859.510 kb on + strand, within frdB at 859.527 kb on - strand, within frdB at 859.603 kb on + strand, within frdB at 859.603 kb on + strand, within frdB at 859.677 kb on + strand at 859.748 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.756 kb on - strand at 859.756 kb on - strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.809 kb on + strand, within HEPCGN_10580 at 860.022 kb on - strand, within HEPCGN_10580 at 860.101 kb on + strand at 860.206 kb on - strand, within frdD at 860.293 kb on + strand, within frdD at 860.336 kb on + strand, within frdD at 860.379 kb on - strand, within frdD at 860.385 kb on + strand, within frdD at 860.386 kb on - strand, within frdD at 860.420 kb on + strand, within frdD at 860.490 kb on + strand at 860.490 kb on + strand at 860.497 kb on + strand at 860.498 kb on - strand at 860.528 kb on + strand at 860.561 kb on + strand at 860.562 kb on - strand at 860.587 kb on + strand at 860.588 kb on - strand at 860.590 kb on + strand at 860.590 kb on + strand at 860.591 kb on - strand at 860.639 kb on + strand at 860.658 kb on - strand at 860.669 kb on - strand at 860.704 kb on + strand, within blaEC at 860.727 kb on + strand, within blaEC at 860.732 kb on + strand, within blaEC at 860.742 kb on + strand, within blaEC at 860.840 kb on + strand, within blaEC at 860.840 kb on + strand, within blaEC at 860.864 kb on - strand, within blaEC at 860.884 kb on - strand, within blaEC at 860.926 kb on + strand, within blaEC at 860.926 kb on + strand, within blaEC at 860.927 kb on - strand, within blaEC at 860.930 kb on - strand, within blaEC at 860.930 kb on - strand, within blaEC at 860.930 kb on - strand, within blaEC at 860.930 kb on - strand, within blaEC at 861.012 kb on + strand, within blaEC at 861.057 kb on + strand, within blaEC
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 858,741 + frdA HEPCGN_10570 0.86 -0.3 858,742 - frdA HEPCGN_10570 0.86 +0.6 858,765 + frdA HEPCGN_10570 0.87 +0.2 858,765 + frdA HEPCGN_10570 0.87 +0.5 858,900 + -1.1 858,900 + +0.1 858,903 + +0.1 858,918 + +1.0 858,954 + -1.3 858,973 - +0.5 859,058 - +3.4 859,067 + frdB HEPCGN_10575 0.11 +0.3 859,068 - frdB HEPCGN_10575 0.11 +1.0 859,068 - frdB HEPCGN_10575 0.11 -0.6 859,098 + frdB HEPCGN_10575 0.15 -0.0 859,116 - frdB HEPCGN_10575 0.17 +0.8 859,222 + frdB HEPCGN_10575 0.32 +0.5 859,242 - frdB HEPCGN_10575 0.34 -1.9 859,269 + frdB HEPCGN_10575 0.38 +0.9 859,269 + frdB HEPCGN_10575 0.38 +1.3 859,273 + frdB HEPCGN_10575 0.39 -0.9 859,384 + frdB HEPCGN_10575 0.54 +0.8 859,384 + frdB HEPCGN_10575 0.54 +1.1 859,385 - frdB HEPCGN_10575 0.54 +0.4 859,416 - frdB HEPCGN_10575 0.58 +0.8 859,454 + frdB HEPCGN_10575 0.63 -0.5 859,510 + frdB HEPCGN_10575 0.71 +1.1 859,527 - frdB HEPCGN_10575 0.73 +0.3 859,603 + frdB HEPCGN_10575 0.84 -0.3 859,603 + frdB HEPCGN_10575 0.84 -0.1 859,677 + +0.9 859,748 + +0.2 859,755 + -0.2 859,755 + +0.3 859,755 + +0.4 859,755 + +0.5 859,756 - +1.1 859,756 - +1.3 859,759 + +0.3 859,759 + +0.0 859,759 + +2.5 859,759 + +0.1 859,759 + +1.5 859,809 + HEPCGN_10580 0.19 +0.7 860,022 - HEPCGN_10580 0.73 +0.4 860,101 + +1.3 860,206 - frdD HEPCGN_10585 0.18 +0.1 860,293 + frdD HEPCGN_10585 0.42 -1.0 860,336 + frdD HEPCGN_10585 0.54 +0.5 860,379 - frdD HEPCGN_10585 0.66 -0.3 860,385 + frdD HEPCGN_10585 0.68 +1.0 860,386 - frdD HEPCGN_10585 0.68 -0.9 860,420 + frdD HEPCGN_10585 0.78 -0.1 860,490 + +0.3 860,490 + -0.7 860,497 + -0.1 860,498 - +0.2 860,528 + -0.7 860,561 + +1.8 860,562 - +0.1 860,587 + +0.0 860,588 - -0.1 860,590 + -0.2 860,590 + -1.2 860,591 - -0.6 860,639 + -0.1 860,658 - -0.8 860,669 - -1.0 860,704 + blaEC HEPCGN_10590 0.13 -0.5 860,727 + blaEC HEPCGN_10590 0.15 -0.3 860,732 + blaEC HEPCGN_10590 0.15 -1.1 860,742 + blaEC HEPCGN_10590 0.16 -1.0 860,840 + blaEC HEPCGN_10590 0.25 -0.9 860,840 + blaEC HEPCGN_10590 0.25 +2.8 860,864 - blaEC HEPCGN_10590 0.27 +0.2 860,884 - blaEC HEPCGN_10590 0.28 +0.3 860,926 + blaEC HEPCGN_10590 0.32 +0.1 860,926 + blaEC HEPCGN_10590 0.32 +0.7 860,927 - blaEC HEPCGN_10590 0.32 +0.1 860,930 - blaEC HEPCGN_10590 0.32 +0.2 860,930 - blaEC HEPCGN_10590 0.32 -2.7 860,930 - blaEC HEPCGN_10590 0.32 -0.2 860,930 - blaEC HEPCGN_10590 0.32 +0.3 861,012 + blaEC HEPCGN_10590 0.40 -0.2 861,057 + blaEC HEPCGN_10590 0.44 +1.5
Or see this region's nucleotide sequence