Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yabI and HEPCGN_08755 are separated by 154 nucleotides HEPCGN_08755 and HEPCGN_08760 are separated by 6 nucleotides
HEPCGN_08750: yabI - Inner membrane protein YabI, at 490,035 to 490,799
yabI
HEPCGN_08755: HEPCGN_08755 - hypothetical protein, at 490,954 to 491,376
_08755
HEPCGN_08760: HEPCGN_08760 - hypothetical protein, at 491,383 to 492,231
_08760
Position (kb) 490
491
492 Strain fitness (log2 ratio) -1
0
1
2
3 at 490.030 kb on - strand at 490.037 kb on - strand at 490.067 kb on + strand at 490.069 kb on + strand at 490.070 kb on - strand at 490.070 kb on - strand at 490.168 kb on + strand, within yabI at 490.207 kb on - strand, within yabI at 490.639 kb on - strand, within yabI at 490.678 kb on - strand, within yabI at 490.757 kb on - strand at 490.757 kb on - strand at 490.773 kb on - strand at 490.776 kb on - strand at 490.799 kb on + strand at 490.799 kb on + strand at 490.799 kb on + strand at 490.842 kb on + strand at 490.843 kb on - strand at 490.843 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand at 491.044 kb on - strand, within HEPCGN_08755 at 491.152 kb on - strand, within HEPCGN_08755 at 491.555 kb on - strand, within HEPCGN_08760 at 491.717 kb on - strand, within HEPCGN_08760 at 491.843 kb on + strand, within HEPCGN_08760 at 491.898 kb on - strand, within HEPCGN_08760 at 491.898 kb on - strand, within HEPCGN_08760 at 491.903 kb on - strand, within HEPCGN_08760 at 491.920 kb on + strand, within HEPCGN_08760 at 491.921 kb on - strand, within HEPCGN_08760 at 491.956 kb on - strand, within HEPCGN_08760 at 492.256 kb on + strand at 492.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 490,030 - -0.6 490,037 - +0.3 490,067 + -1.0 490,069 + +3.2 490,070 - -0.1 490,070 - +0.1 490,168 + yabI HEPCGN_08750 0.17 +0.8 490,207 - yabI HEPCGN_08750 0.22 -0.6 490,639 - yabI HEPCGN_08750 0.79 -0.3 490,678 - yabI HEPCGN_08750 0.84 -0.5 490,757 - -0.7 490,757 - -0.3 490,773 - +0.4 490,776 - +0.1 490,799 + +0.5 490,799 + -0.1 490,799 + -0.3 490,842 + +1.1 490,843 - +0.6 490,843 - -0.1 490,848 - -0.3 490,848 - -0.5 491,044 - HEPCGN_08755 0.21 -1.1 491,152 - HEPCGN_08755 0.47 -0.2 491,555 - HEPCGN_08760 0.20 +1.3 491,717 - HEPCGN_08760 0.39 +0.2 491,843 + HEPCGN_08760 0.54 +0.8 491,898 - HEPCGN_08760 0.61 +0.3 491,898 - HEPCGN_08760 0.61 -0.0 491,903 - HEPCGN_08760 0.61 -0.7 491,920 + HEPCGN_08760 0.63 -0.3 491,921 - HEPCGN_08760 0.63 +0.1 491,956 - HEPCGN_08760 0.67 -0.5 492,256 + -1.1 492,266 - +0.0
Or see this region's nucleotide sequence