Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ampG and cyoA are separated by 459 nucleotides cyoA and cyoB are separated by 21 nucleotides
HEPCGN_06970: ampG - muropeptide MFS transporter AmpG, at 129,695 to 131,170
ampG
HEPCGN_06975: cyoA - cytochrome o ubiquinol oxidase subunit II, at 131,630 to 132,577
cyoA
HEPCGN_06980: cyoB - cytochrome o ubiquinol oxidase subunit I, at 132,599 to 134,590
cyoB
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 130.634 kb on - strand, within ampG at 130.634 kb on - strand, within ampG at 130.693 kb on + strand, within ampG at 130.729 kb on + strand, within ampG at 130.729 kb on + strand, within ampG at 130.729 kb on + strand, within ampG at 130.732 kb on + strand, within ampG at 130.732 kb on + strand, within ampG at 130.783 kb on - strand, within ampG at 130.793 kb on + strand, within ampG at 130.873 kb on - strand, within ampG at 130.883 kb on - strand, within ampG at 130.916 kb on + strand, within ampG at 130.919 kb on - strand, within ampG at 131.168 kb on + strand at 131.168 kb on + strand at 131.169 kb on - strand at 131.180 kb on - strand at 131.183 kb on - strand at 131.246 kb on - strand at 131.270 kb on - strand at 131.456 kb on - strand at 131.507 kb on + strand at 131.507 kb on + strand at 131.555 kb on - strand at 131.645 kb on + strand at 131.651 kb on - strand at 131.674 kb on - strand at 131.689 kb on - strand at 131.718 kb on + strand at 131.719 kb on - strand at 131.834 kb on + strand, within cyoA at 131.857 kb on + strand, within cyoA at 131.858 kb on - strand, within cyoA at 131.861 kb on + strand, within cyoA at 131.861 kb on + strand, within cyoA at 131.862 kb on - strand, within cyoA at 131.913 kb on + strand, within cyoA at 131.914 kb on - strand, within cyoA at 131.917 kb on + strand, within cyoA at 131.917 kb on + strand, within cyoA at 131.918 kb on - strand, within cyoA at 131.922 kb on + strand, within cyoA at 131.922 kb on + strand, within cyoA at 131.944 kb on - strand, within cyoA at 131.977 kb on + strand, within cyoA at 132.179 kb on + strand, within cyoA at 132.295 kb on + strand, within cyoA at 132.296 kb on - strand, within cyoA at 132.407 kb on + strand, within cyoA at 132.464 kb on - strand, within cyoA at 132.484 kb on + strand at 132.576 kb on - strand at 132.595 kb on - strand at 132.595 kb on - strand at 132.643 kb on + strand at 132.671 kb on - strand at 132.726 kb on - strand at 132.726 kb on - strand at 132.760 kb on + strand at 132.772 kb on + strand at 132.772 kb on + strand at 132.772 kb on + strand at 132.773 kb on - strand at 132.779 kb on + strand at 132.780 kb on - strand at 132.780 kb on - strand at 132.780 kb on - strand at 132.780 kb on - strand at 132.780 kb on - strand at 132.780 kb on - strand at 132.781 kb on + strand at 132.781 kb on + strand at 132.782 kb on - strand at 132.782 kb on - strand at 132.838 kb on + strand, within cyoB at 132.838 kb on + strand, within cyoB at 133.116 kb on - strand, within cyoB at 133.139 kb on + strand, within cyoB at 133.139 kb on + strand, within cyoB at 133.139 kb on + strand, within cyoB at 133.139 kb on + strand, within cyoB at 133.139 kb on + strand, within cyoB at 133.140 kb on - strand, within cyoB at 133.140 kb on - strand, within cyoB at 133.195 kb on - strand, within cyoB at 133.199 kb on - strand, within cyoB at 133.283 kb on - strand, within cyoB at 133.309 kb on - strand, within cyoB at 133.316 kb on - strand, within cyoB at 133.421 kb on + strand, within cyoB at 133.421 kb on + strand, within cyoB at 133.421 kb on + strand, within cyoB at 133.421 kb on + strand, within cyoB at 133.422 kb on - strand, within cyoB at 133.422 kb on - strand, within cyoB at 133.461 kb on - strand, within cyoB at 133.519 kb on + strand, within cyoB at 133.535 kb on + strand, within cyoB at 133.537 kb on + strand, within cyoB
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 130,634 - ampG HEPCGN_06970 0.64 +1.3 130,634 - ampG HEPCGN_06970 0.64 +2.0 130,693 + ampG HEPCGN_06970 0.68 +0.6 130,729 + ampG HEPCGN_06970 0.70 +0.5 130,729 + ampG HEPCGN_06970 0.70 +0.1 130,729 + ampG HEPCGN_06970 0.70 +0.7 130,732 + ampG HEPCGN_06970 0.70 -0.6 130,732 + ampG HEPCGN_06970 0.70 -0.9 130,783 - ampG HEPCGN_06970 0.74 +1.8 130,793 + ampG HEPCGN_06970 0.74 -0.2 130,873 - ampG HEPCGN_06970 0.80 +1.8 130,883 - ampG HEPCGN_06970 0.80 -0.0 130,916 + ampG HEPCGN_06970 0.83 +0.1 130,919 - ampG HEPCGN_06970 0.83 +0.0 131,168 + +1.1 131,168 + -2.3 131,169 - -0.5 131,180 - -0.7 131,183 - +0.2 131,246 - -1.4 131,270 - +0.1 131,456 - -0.4 131,507 + +0.3 131,507 + +0.4 131,555 - +0.8 131,645 + +0.4 131,651 - +0.4 131,674 - +0.2 131,689 - +0.5 131,718 + -0.4 131,719 - +0.0 131,834 + cyoA HEPCGN_06975 0.22 -0.7 131,857 + cyoA HEPCGN_06975 0.24 +0.3 131,858 - cyoA HEPCGN_06975 0.24 -1.3 131,861 + cyoA HEPCGN_06975 0.24 +0.3 131,861 + cyoA HEPCGN_06975 0.24 -1.4 131,862 - cyoA HEPCGN_06975 0.24 -1.2 131,913 + cyoA HEPCGN_06975 0.30 -0.7 131,914 - cyoA HEPCGN_06975 0.30 -1.0 131,917 + cyoA HEPCGN_06975 0.30 -0.3 131,917 + cyoA HEPCGN_06975 0.30 -0.6 131,918 - cyoA HEPCGN_06975 0.30 +0.7 131,922 + cyoA HEPCGN_06975 0.31 -0.8 131,922 + cyoA HEPCGN_06975 0.31 -1.8 131,944 - cyoA HEPCGN_06975 0.33 +0.1 131,977 + cyoA HEPCGN_06975 0.37 -2.6 132,179 + cyoA HEPCGN_06975 0.58 -1.0 132,295 + cyoA HEPCGN_06975 0.70 +2.9 132,296 - cyoA HEPCGN_06975 0.70 +0.1 132,407 + cyoA HEPCGN_06975 0.82 -0.3 132,464 - cyoA HEPCGN_06975 0.88 -0.4 132,484 + -0.3 132,576 - -1.2 132,595 - -0.5 132,595 - -0.6 132,643 + +0.5 132,671 - -2.3 132,726 - +0.3 132,726 - +0.1 132,760 + -1.3 132,772 + +0.5 132,772 + +0.0 132,772 + +0.8 132,773 - -0.5 132,779 + +0.5 132,780 - -1.1 132,780 - -0.4 132,780 - -2.1 132,780 - -0.4 132,780 - +0.6 132,780 - -0.3 132,781 + +0.8 132,781 + -0.0 132,782 - -0.9 132,782 - +0.6 132,838 + cyoB HEPCGN_06980 0.12 -0.7 132,838 + cyoB HEPCGN_06980 0.12 +1.3 133,116 - cyoB HEPCGN_06980 0.26 -0.4 133,139 + cyoB HEPCGN_06980 0.27 +0.1 133,139 + cyoB HEPCGN_06980 0.27 +0.4 133,139 + cyoB HEPCGN_06980 0.27 +0.6 133,139 + cyoB HEPCGN_06980 0.27 -1.0 133,139 + cyoB HEPCGN_06980 0.27 -1.7 133,140 - cyoB HEPCGN_06980 0.27 +0.1 133,140 - cyoB HEPCGN_06980 0.27 +0.9 133,195 - cyoB HEPCGN_06980 0.30 +0.5 133,199 - cyoB HEPCGN_06980 0.30 +0.9 133,283 - cyoB HEPCGN_06980 0.34 +0.6 133,309 - cyoB HEPCGN_06980 0.36 -0.6 133,316 - cyoB HEPCGN_06980 0.36 -0.4 133,421 + cyoB HEPCGN_06980 0.41 -0.0 133,421 + cyoB HEPCGN_06980 0.41 +1.0 133,421 + cyoB HEPCGN_06980 0.41 -0.9 133,421 + cyoB HEPCGN_06980 0.41 -1.1 133,422 - cyoB HEPCGN_06980 0.41 +0.5 133,422 - cyoB HEPCGN_06980 0.41 -1.1 133,461 - cyoB HEPCGN_06980 0.43 +0.4 133,519 + cyoB HEPCGN_06980 0.46 -0.1 133,535 + cyoB HEPCGN_06980 0.47 -0.2 133,537 + cyoB HEPCGN_06980 0.47 +1.5
Or see this region's nucleotide sequence