Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03680

Experiment: TP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_03675 and HEPCGN_03680 are separated by 40 nucleotidesHEPCGN_03680 and HEPCGN_03685 are separated by 252 nucleotides HEPCGN_03670: HEPCGN_03670 - Putative bacterial toxin ydaT, at 652,516 to 653,037 _03670 HEPCGN_03675: HEPCGN_03675 - Ybl78, at 653,018 to 653,983 _03675 HEPCGN_03680: HEPCGN_03680 - DUF977 domain-containing protein, at 654,024 to 654,446 _03680 HEPCGN_03685: HEPCGN_03685 - SMEK domain-containing protein, at 654,699 to 655,598 _03685 Position (kb) 654 655Strain fitness (log2 ratio) -2 -1 0 1at 653.050 kb on + strandat 653.050 kb on + strandat 653.504 kb on - strand, within HEPCGN_03675at 653.504 kb on - strand, within HEPCGN_03675at 653.684 kb on + strand, within HEPCGN_03675at 654.191 kb on - strand, within HEPCGN_03680at 654.309 kb on - strand, within HEPCGN_03680at 654.334 kb on + strand, within HEPCGN_03680at 654.461 kb on - strandat 654.496 kb on - strandat 654.506 kb on + strandat 654.507 kb on - strandat 654.695 kb on - strandat 655.289 kb on + strand, within HEPCGN_03685at 655.411 kb on + strand, within HEPCGN_03685at 655.411 kb on + strand, within HEPCGN_03685

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Per-strain Table

Position Strand Gene LocusTag Fraction TP15
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653,050 + -0.7
653,050 + +0.1
653,504 - HEPCGN_03675 0.50 -2.6
653,504 - HEPCGN_03675 0.50 +0.5
653,684 + HEPCGN_03675 0.69 -0.6
654,191 - HEPCGN_03680 0.39 -0.3
654,309 - HEPCGN_03680 0.67 -2.0
654,334 + HEPCGN_03680 0.73 -0.1
654,461 - -0.1
654,496 - -0.3
654,506 + -1.6
654,507 - +0.3
654,695 - +0.1
655,289 + HEPCGN_03685 0.66 +0.2
655,411 + HEPCGN_03685 0.79 -0.5
655,411 + HEPCGN_03685 0.79 -1.1

Or see this region's nucleotide sequence