Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt udk and dcd are separated by 91 nucleotides dcd and asmA are separated by 21 nucleotides asmA and HEPCGN_02985 are separated by 52 nucleotides HEPCGN_02985 and HEPCGN_02990 overlap by 11 nucleotides HEPCGN_02990 and yegH are separated by 74 nucleotides
HEPCGN_02970: udk - uridine kinase, at 502,416 to 503,057
udk
HEPCGN_02975: dcd - dCTP deaminase, at 503,149 to 503,730
dcd
HEPCGN_02980: asmA - outer membrane assembly protein AsmA, at 503,752 to 505,605
asmA
HEPCGN_02985: HEPCGN_02985 - transcriptional regulator, at 505,658 to 505,948
_02985
HEPCGN_02990: HEPCGN_02990 - Type II toxin-antitoxin system RelE/ParE family toxin, at 505,938 to 506,276
_02990
HEPCGN_02995: yegH - UPF0053 protein YegH, at 506,351 to 507,934
yegH
Position (kb) 503
504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 502.811 kb on + strand, within udk at 502.982 kb on + strand, within udk at 503.023 kb on + strand at 503.024 kb on - strand at 503.055 kb on + strand at 503.073 kb on + strand at 503.230 kb on - strand, within dcd at 503.392 kb on + strand, within dcd at 503.567 kb on - strand, within dcd at 503.659 kb on + strand, within dcd at 503.728 kb on + strand at 503.851 kb on + strand at 503.853 kb on + strand at 503.877 kb on + strand at 503.877 kb on + strand at 503.934 kb on + strand at 503.935 kb on - strand at 503.935 kb on - strand at 503.935 kb on - strand at 503.935 kb on - strand at 504.032 kb on + strand, within asmA at 504.068 kb on + strand, within asmA at 504.189 kb on + strand, within asmA at 504.190 kb on - strand, within asmA at 504.353 kb on + strand, within asmA at 504.371 kb on + strand, within asmA at 504.460 kb on - strand, within asmA at 504.504 kb on + strand, within asmA at 504.504 kb on + strand, within asmA at 504.504 kb on + strand, within asmA at 504.549 kb on + strand, within asmA at 504.550 kb on - strand, within asmA at 504.749 kb on - strand, within asmA at 504.749 kb on - strand, within asmA at 505.068 kb on - strand, within asmA at 505.509 kb on - strand at 505.604 kb on - strand at 505.648 kb on - strand at 505.659 kb on + strand at 505.847 kb on - strand, within HEPCGN_02985 at 505.975 kb on + strand, within HEPCGN_02990 at 505.976 kb on - strand, within HEPCGN_02990 at 506.074 kb on + strand, within HEPCGN_02990 at 506.074 kb on + strand, within HEPCGN_02990 at 506.075 kb on - strand, within HEPCGN_02990 at 506.075 kb on - strand, within HEPCGN_02990 at 506.086 kb on + strand, within HEPCGN_02990 at 506.087 kb on - strand, within HEPCGN_02990 at 506.087 kb on - strand, within HEPCGN_02990 at 506.159 kb on - strand, within HEPCGN_02990 at 506.167 kb on - strand, within HEPCGN_02990 at 506.278 kb on - strand at 506.380 kb on + strand at 506.445 kb on + strand at 506.446 kb on - strand at 506.446 kb on - strand at 506.493 kb on + strand at 506.504 kb on + strand at 506.556 kb on + strand, within yegH
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 502,811 + udk HEPCGN_02970 0.62 -0.2 502,982 + udk HEPCGN_02970 0.88 -0.1 503,023 + +0.3 503,024 - -0.7 503,055 + -0.5 503,073 + +0.4 503,230 - dcd HEPCGN_02975 0.14 -1.9 503,392 + dcd HEPCGN_02975 0.42 +1.6 503,567 - dcd HEPCGN_02975 0.72 -1.5 503,659 + dcd HEPCGN_02975 0.88 +1.5 503,728 + +1.0 503,851 + -0.4 503,853 + +0.9 503,877 + -0.5 503,877 + -2.3 503,934 + +0.6 503,935 - -0.4 503,935 - -0.3 503,935 - +1.4 503,935 - -1.0 504,032 + asmA HEPCGN_02980 0.15 -0.3 504,068 + asmA HEPCGN_02980 0.17 -2.3 504,189 + asmA HEPCGN_02980 0.24 -0.2 504,190 - asmA HEPCGN_02980 0.24 +0.2 504,353 + asmA HEPCGN_02980 0.32 -0.6 504,371 + asmA HEPCGN_02980 0.33 +0.0 504,460 - asmA HEPCGN_02980 0.38 +1.3 504,504 + asmA HEPCGN_02980 0.41 -1.4 504,504 + asmA HEPCGN_02980 0.41 -1.4 504,504 + asmA HEPCGN_02980 0.41 +0.7 504,549 + asmA HEPCGN_02980 0.43 -2.7 504,550 - asmA HEPCGN_02980 0.43 -0.7 504,749 - asmA HEPCGN_02980 0.54 -3.2 504,749 - asmA HEPCGN_02980 0.54 -1.3 505,068 - asmA HEPCGN_02980 0.71 +0.1 505,509 - +0.1 505,604 - +0.1 505,648 - -0.3 505,659 + +2.9 505,847 - HEPCGN_02985 0.65 -0.1 505,975 + HEPCGN_02990 0.11 +0.4 505,976 - HEPCGN_02990 0.11 -0.5 506,074 + HEPCGN_02990 0.40 +2.3 506,074 + HEPCGN_02990 0.40 +1.1 506,075 - HEPCGN_02990 0.40 +0.3 506,075 - HEPCGN_02990 0.40 +0.1 506,086 + HEPCGN_02990 0.44 -1.1 506,087 - HEPCGN_02990 0.44 +0.4 506,087 - HEPCGN_02990 0.44 -0.1 506,159 - HEPCGN_02990 0.65 -0.7 506,167 - HEPCGN_02990 0.68 -0.1 506,278 - -0.5 506,380 + -0.9 506,445 + -0.1 506,446 - -0.2 506,446 - +0.1 506,493 + +1.3 506,504 + -0.4 506,556 + yegH HEPCGN_02995 0.13 -0.1
Or see this region's nucleotide sequence