Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02470 and HEPCGN_02475 are separated by 36 nucleotides HEPCGN_02475 and HEPCGN_02480 are separated by 221 nucleotides HEPCGN_02480 and HEPCGN_02485 are separated by 1 nucleotides HEPCGN_02485 and HEPCGN_02490 are separated by 338 nucleotides
HEPCGN_02470: HEPCGN_02470 - DUF1327 domain-containing protein, at 400,448 to 400,852
_02470
HEPCGN_02475: HEPCGN_02475 - SAR-endolysin, at 400,889 to 401,422
_02475
HEPCGN_02480: HEPCGN_02480 - Membrane protein, at 401,644 to 401,757
_02480
HEPCGN_02485: HEPCGN_02485 - lysis protein, at 401,759 to 402,226
_02485
HEPCGN_02490: HEPCGN_02490 - Protein TonB, at 402,565 to 402,891
_02490
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 400.649 kb on - strand, within HEPCGN_02470 at 400.739 kb on - strand, within HEPCGN_02470 at 400.833 kb on - strand at 400.846 kb on + strand at 400.876 kb on - strand at 400.879 kb on + strand at 400.879 kb on + strand at 400.880 kb on - strand at 400.882 kb on + strand at 400.884 kb on + strand at 401.269 kb on + strand, within HEPCGN_02475 at 401.354 kb on - strand, within HEPCGN_02475 at 401.420 kb on + strand at 401.581 kb on + strand at 401.581 kb on + strand at 401.582 kb on - strand at 401.685 kb on - strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.717 kb on + strand, within HEPCGN_02480 at 401.856 kb on - strand, within HEPCGN_02485 at 401.912 kb on - strand, within HEPCGN_02485 at 402.098 kb on - strand, within HEPCGN_02485 at 402.200 kb on + strand at 402.200 kb on + strand at 402.200 kb on + strand at 402.201 kb on - strand at 402.441 kb on + strand at 402.442 kb on - strand at 402.491 kb on + strand at 402.491 kb on + strand at 402.532 kb on + strand at 402.619 kb on - strand, within HEPCGN_02490 at 402.663 kb on - strand, within HEPCGN_02490 at 402.663 kb on - strand, within HEPCGN_02490 at 402.679 kb on + strand, within HEPCGN_02490 at 402.680 kb on - strand, within HEPCGN_02490 at 402.694 kb on + strand, within HEPCGN_02490 at 402.696 kb on + strand, within HEPCGN_02490 at 402.696 kb on + strand, within HEPCGN_02490 at 402.697 kb on - strand, within HEPCGN_02490 at 402.699 kb on - strand, within HEPCGN_02490
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 400,649 - HEPCGN_02470 0.50 +0.2 400,739 - HEPCGN_02470 0.72 -1.2 400,833 - +0.4 400,846 + +0.0 400,876 - -0.4 400,879 + +0.5 400,879 + +0.6 400,880 - -1.2 400,882 + +0.3 400,884 + +0.5 401,269 + HEPCGN_02475 0.71 +0.6 401,354 - HEPCGN_02475 0.87 -1.5 401,420 + +0.2 401,581 + -0.2 401,581 + -0.1 401,582 - -0.3 401,685 - HEPCGN_02480 0.36 +1.3 401,712 + HEPCGN_02480 0.60 -0.6 401,712 + HEPCGN_02480 0.60 -0.7 401,717 + HEPCGN_02480 0.64 +6.2 401,856 - HEPCGN_02485 0.21 -1.2 401,912 - HEPCGN_02485 0.33 +3.0 402,098 - HEPCGN_02485 0.72 -0.2 402,200 + -2.8 402,200 + -0.8 402,200 + -0.3 402,201 - +0.4 402,441 + +0.5 402,442 - +1.4 402,491 + -0.1 402,491 + -0.7 402,532 + +0.6 402,619 - HEPCGN_02490 0.17 -0.5 402,663 - HEPCGN_02490 0.30 +0.3 402,663 - HEPCGN_02490 0.30 -0.1 402,679 + HEPCGN_02490 0.35 +2.0 402,680 - HEPCGN_02490 0.35 +1.0 402,694 + HEPCGN_02490 0.39 +0.5 402,696 + HEPCGN_02490 0.40 +0.4 402,696 + HEPCGN_02490 0.40 +0.8 402,697 - HEPCGN_02490 0.40 +0.8 402,699 - HEPCGN_02490 0.41 -0.2
Or see this region's nucleotide sequence