Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01325 and HEPCGN_01330 are separated by 326 nucleotides HEPCGN_01330 and hutU are separated by 311 nucleotides hutU and HEPCGN_01340 are separated by 163 nucleotides
HEPCGN_01325: HEPCGN_01325 - RNA-splicing ligase RtcB, at 192,385 to 193,782
_01325
HEPCGN_01330: HEPCGN_01330 - hypothetical protein, at 194,109 to 194,228
_01330
HEPCGN_01335: hutU - urocanate hydratase, at 194,540 to 196,237
hutU
HEPCGN_01340: HEPCGN_01340 - cytosine permease, at 196,401 to 197,810
_01340
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 193.637 kb on - strand, within HEPCGN_01325 at 193.673 kb on - strand at 193.673 kb on - strand at 193.702 kb on + strand at 193.888 kb on - strand at 193.927 kb on + strand at 194.545 kb on + strand at 194.702 kb on + strand at 194.702 kb on + strand at 194.702 kb on + strand at 194.702 kb on + strand at 194.703 kb on - strand at 194.703 kb on - strand at 194.711 kb on - strand, within hutU at 194.711 kb on - strand, within hutU at 194.833 kb on + strand, within hutU at 194.866 kb on + strand, within hutU at 194.917 kb on + strand, within hutU at 194.934 kb on - strand, within hutU at 194.934 kb on - strand, within hutU at 194.963 kb on + strand, within hutU at 194.964 kb on - strand, within hutU at 195.029 kb on + strand, within hutU at 195.030 kb on - strand, within hutU at 195.130 kb on - strand, within hutU at 195.134 kb on - strand, within hutU at 195.235 kb on + strand, within hutU at 195.236 kb on - strand, within hutU at 195.385 kb on - strand, within hutU at 195.402 kb on + strand, within hutU at 195.612 kb on - strand, within hutU at 195.686 kb on + strand, within hutU at 195.794 kb on - strand, within hutU at 195.867 kb on + strand, within hutU at 196.081 kb on + strand at 196.239 kb on + strand at 196.302 kb on + strand at 196.529 kb on - strand at 196.604 kb on - strand, within HEPCGN_01340 at 196.742 kb on + strand, within HEPCGN_01340 at 196.745 kb on + strand, within HEPCGN_01340 at 196.939 kb on - strand, within HEPCGN_01340 at 197.064 kb on + strand, within HEPCGN_01340 at 197.225 kb on + strand, within HEPCGN_01340
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 193,637 - HEPCGN_01325 0.90 +0.5 193,673 - -0.1 193,673 - +1.8 193,702 + -0.8 193,888 - -0.1 193,927 + +0.1 194,545 + -0.6 194,702 + -0.0 194,702 + +0.3 194,702 + -0.7 194,702 + -1.0 194,703 - +0.2 194,703 - +1.1 194,711 - hutU HEPCGN_01335 0.10 +0.1 194,711 - hutU HEPCGN_01335 0.10 -2.1 194,833 + hutU HEPCGN_01335 0.17 +0.3 194,866 + hutU HEPCGN_01335 0.19 -0.7 194,917 + hutU HEPCGN_01335 0.22 -0.3 194,934 - hutU HEPCGN_01335 0.23 -0.1 194,934 - hutU HEPCGN_01335 0.23 -0.2 194,963 + hutU HEPCGN_01335 0.25 -0.4 194,964 - hutU HEPCGN_01335 0.25 -0.4 195,029 + hutU HEPCGN_01335 0.29 -0.5 195,030 - hutU HEPCGN_01335 0.29 -2.1 195,130 - hutU HEPCGN_01335 0.35 -0.5 195,134 - hutU HEPCGN_01335 0.35 -0.6 195,235 + hutU HEPCGN_01335 0.41 -0.5 195,236 - hutU HEPCGN_01335 0.41 -0.5 195,385 - hutU HEPCGN_01335 0.50 -0.5 195,402 + hutU HEPCGN_01335 0.51 +0.9 195,612 - hutU HEPCGN_01335 0.63 +1.2 195,686 + hutU HEPCGN_01335 0.67 -0.7 195,794 - hutU HEPCGN_01335 0.74 +3.9 195,867 + hutU HEPCGN_01335 0.78 -0.7 196,081 + +2.7 196,239 + +1.1 196,302 + +0.0 196,529 - -0.1 196,604 - HEPCGN_01340 0.14 +0.8 196,742 + HEPCGN_01340 0.24 -0.3 196,745 + HEPCGN_01340 0.24 +1.3 196,939 - HEPCGN_01340 0.38 -0.6 197,064 + HEPCGN_01340 0.47 -0.2 197,225 + HEPCGN_01340 0.58 -0.2
Or see this region's nucleotide sequence