Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mltD and ubiE are separated by 48 nucleotides ubiE and yafD are separated by 76 nucleotides
HEPCGN_07925: mltD - murein transglycosylase D, at 322,928 to 324,148
mltD
HEPCGN_07930: ubiE - SAM-dependent methyltransferase, at 324,197 to 324,967
ubiE
HEPCGN_07935: yafD - endonuclease/exonuclease/phosphatase family protein, at 325,044 to 325,823
yafD
Position (kb) 324
325 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 323.243 kb on + strand, within mltD at 323.373 kb on - strand, within mltD at 323.373 kb on - strand, within mltD at 323.374 kb on + strand, within mltD at 323.375 kb on - strand, within mltD at 323.407 kb on + strand, within mltD at 323.477 kb on + strand, within mltD at 323.478 kb on - strand, within mltD at 323.794 kb on + strand, within mltD at 323.795 kb on - strand, within mltD at 323.816 kb on + strand, within mltD at 323.824 kb on - strand, within mltD at 323.953 kb on + strand, within mltD at 323.954 kb on - strand, within mltD at 323.989 kb on + strand, within mltD at 323.990 kb on - strand, within mltD at 323.990 kb on - strand, within mltD at 323.990 kb on - strand, within mltD at 323.990 kb on - strand, within mltD at 323.990 kb on - strand, within mltD at 323.990 kb on - strand, within mltD at 324.061 kb on - strand at 324.194 kb on + strand at 324.195 kb on - strand at 324.195 kb on - strand at 324.195 kb on - strand at 324.209 kb on - strand at 324.219 kb on - strand at 324.219 kb on - strand at 324.229 kb on + strand at 324.230 kb on - strand at 324.230 kb on - strand at 324.317 kb on + strand, within ubiE at 324.318 kb on - strand, within ubiE at 324.318 kb on - strand, within ubiE at 324.321 kb on - strand, within ubiE at 324.372 kb on - strand, within ubiE at 324.376 kb on + strand, within ubiE at 324.377 kb on - strand, within ubiE at 324.398 kb on + strand, within ubiE at 324.399 kb on - strand, within ubiE at 324.419 kb on + strand, within ubiE at 324.444 kb on + strand, within ubiE at 324.463 kb on + strand, within ubiE at 324.488 kb on + strand, within ubiE at 324.524 kb on + strand, within ubiE at 324.524 kb on + strand, within ubiE at 324.525 kb on - strand, within ubiE at 324.525 kb on - strand, within ubiE at 324.525 kb on - strand, within ubiE at 324.525 kb on - strand, within ubiE at 324.625 kb on + strand, within ubiE at 324.632 kb on - strand, within ubiE at 324.753 kb on + strand, within ubiE at 324.754 kb on - strand, within ubiE at 324.825 kb on - strand, within ubiE at 324.825 kb on - strand, within ubiE at 324.825 kb on - strand, within ubiE at 324.890 kb on + strand, within ubiE at 324.890 kb on + strand, within ubiE at 324.906 kb on + strand at 324.907 kb on - strand at 324.938 kb on + strand at 324.938 kb on + strand at 324.939 kb on - strand at 324.939 kb on - strand at 324.981 kb on + strand at 325.040 kb on + strand at 325.041 kb on - strand at 325.041 kb on - strand at 325.081 kb on - strand at 325.114 kb on - strand at 325.237 kb on + strand, within yafD at 325.238 kb on - strand, within yafD at 325.240 kb on - strand, within yafD at 325.240 kb on - strand, within yafD at 325.257 kb on - strand, within yafD at 325.332 kb on + strand, within yafD at 325.333 kb on - strand, within yafD at 325.340 kb on + strand, within yafD at 325.341 kb on - strand, within yafD at 325.343 kb on + strand, within yafD at 325.380 kb on + strand, within yafD at 325.380 kb on + strand, within yafD at 325.380 kb on + strand, within yafD at 325.381 kb on - strand, within yafD at 325.383 kb on - strand, within yafD at 325.386 kb on - strand, within yafD at 325.486 kb on + strand, within yafD at 325.486 kb on + strand, within yafD at 325.487 kb on - strand, within yafD at 325.552 kb on - strand, within yafD at 325.570 kb on + strand, within yafD at 325.570 kb on + strand, within yafD at 325.575 kb on - strand, within yafD at 325.593 kb on + strand, within yafD at 325.594 kb on - strand, within yafD at 325.624 kb on - strand, within yafD at 325.690 kb on + strand, within yafD at 325.691 kb on - strand, within yafD at 325.692 kb on + strand, within yafD at 325.692 kb on + strand, within yafD at 325.692 kb on + strand, within yafD at 325.693 kb on - strand, within yafD at 325.817 kb on - strand at 325.866 kb on + strand at 325.867 kb on - strand at 325.898 kb on - strand at 325.904 kb on - strand at 325.940 kb on + strand at 325.943 kb on - strand at 325.943 kb on - strand at 325.953 kb on - strand at 325.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 323,243 + mltD HEPCGN_07925 0.26 -0.4 323,373 - mltD HEPCGN_07925 0.36 +0.9 323,373 - mltD HEPCGN_07925 0.36 +0.5 323,374 + mltD HEPCGN_07925 0.37 +1.2 323,375 - mltD HEPCGN_07925 0.37 -0.3 323,407 + mltD HEPCGN_07925 0.39 -0.1 323,477 + mltD HEPCGN_07925 0.45 -0.3 323,478 - mltD HEPCGN_07925 0.45 -0.0 323,794 + mltD HEPCGN_07925 0.71 -0.3 323,795 - mltD HEPCGN_07925 0.71 -1.4 323,816 + mltD HEPCGN_07925 0.73 -0.4 323,824 - mltD HEPCGN_07925 0.73 -0.9 323,953 + mltD HEPCGN_07925 0.84 -1.1 323,954 - mltD HEPCGN_07925 0.84 -0.2 323,989 + mltD HEPCGN_07925 0.87 +0.1 323,990 - mltD HEPCGN_07925 0.87 -0.1 323,990 - mltD HEPCGN_07925 0.87 +0.4 323,990 - mltD HEPCGN_07925 0.87 -0.4 323,990 - mltD HEPCGN_07925 0.87 +0.2 323,990 - mltD HEPCGN_07925 0.87 +0.0 323,990 - mltD HEPCGN_07925 0.87 +1.1 324,061 - -0.5 324,194 + -0.9 324,195 - +0.3 324,195 - +0.4 324,195 - -0.1 324,209 - -0.2 324,219 - +1.3 324,219 - -0.7 324,229 + +0.9 324,230 - -0.4 324,230 - -1.1 324,317 + ubiE HEPCGN_07930 0.16 +0.1 324,318 - ubiE HEPCGN_07930 0.16 -0.2 324,318 - ubiE HEPCGN_07930 0.16 -2.0 324,321 - ubiE HEPCGN_07930 0.16 +0.1 324,372 - ubiE HEPCGN_07930 0.23 -0.1 324,376 + ubiE HEPCGN_07930 0.23 +0.5 324,377 - ubiE HEPCGN_07930 0.23 -1.3 324,398 + ubiE HEPCGN_07930 0.26 +2.8 324,399 - ubiE HEPCGN_07930 0.26 -1.1 324,419 + ubiE HEPCGN_07930 0.29 +0.0 324,444 + ubiE HEPCGN_07930 0.32 +0.2 324,463 + ubiE HEPCGN_07930 0.35 +0.7 324,488 + ubiE HEPCGN_07930 0.38 +0.7 324,524 + ubiE HEPCGN_07930 0.42 -2.1 324,524 + ubiE HEPCGN_07930 0.42 -1.1 324,525 - ubiE HEPCGN_07930 0.43 -0.4 324,525 - ubiE HEPCGN_07930 0.43 +0.2 324,525 - ubiE HEPCGN_07930 0.43 -0.3 324,525 - ubiE HEPCGN_07930 0.43 -0.8 324,625 + ubiE HEPCGN_07930 0.56 -1.2 324,632 - ubiE HEPCGN_07930 0.56 +0.7 324,753 + ubiE HEPCGN_07930 0.72 -1.2 324,754 - ubiE HEPCGN_07930 0.72 +0.1 324,825 - ubiE HEPCGN_07930 0.81 -0.3 324,825 - ubiE HEPCGN_07930 0.81 +0.3 324,825 - ubiE HEPCGN_07930 0.81 -0.3 324,890 + ubiE HEPCGN_07930 0.90 +0.2 324,890 + ubiE HEPCGN_07930 0.90 -0.9 324,906 + +0.9 324,907 - +0.0 324,938 + +0.2 324,938 + -0.5 324,939 - +0.7 324,939 - -1.2 324,981 + -1.6 325,040 + +2.4 325,041 - -0.3 325,041 - +0.3 325,081 - -0.9 325,114 - -0.2 325,237 + yafD HEPCGN_07935 0.25 -0.3 325,238 - yafD HEPCGN_07935 0.25 -0.7 325,240 - yafD HEPCGN_07935 0.25 +0.0 325,240 - yafD HEPCGN_07935 0.25 -0.7 325,257 - yafD HEPCGN_07935 0.27 -1.6 325,332 + yafD HEPCGN_07935 0.37 +0.5 325,333 - yafD HEPCGN_07935 0.37 +0.1 325,340 + yafD HEPCGN_07935 0.38 +0.1 325,341 - yafD HEPCGN_07935 0.38 +0.5 325,343 + yafD HEPCGN_07935 0.38 -0.1 325,380 + yafD HEPCGN_07935 0.43 +0.0 325,380 + yafD HEPCGN_07935 0.43 -1.1 325,380 + yafD HEPCGN_07935 0.43 -0.2 325,381 - yafD HEPCGN_07935 0.43 -0.1 325,383 - yafD HEPCGN_07935 0.43 +0.5 325,386 - yafD HEPCGN_07935 0.44 +0.7 325,486 + yafD HEPCGN_07935 0.57 +0.3 325,486 + yafD HEPCGN_07935 0.57 +0.2 325,487 - yafD HEPCGN_07935 0.57 +2.3 325,552 - yafD HEPCGN_07935 0.65 -2.0 325,570 + yafD HEPCGN_07935 0.67 -1.1 325,570 + yafD HEPCGN_07935 0.67 -0.1 325,575 - yafD HEPCGN_07935 0.68 -0.1 325,593 + yafD HEPCGN_07935 0.70 -0.2 325,594 - yafD HEPCGN_07935 0.71 +0.5 325,624 - yafD HEPCGN_07935 0.74 +0.1 325,690 + yafD HEPCGN_07935 0.83 +1.3 325,691 - yafD HEPCGN_07935 0.83 +0.9 325,692 + yafD HEPCGN_07935 0.83 -0.1 325,692 + yafD HEPCGN_07935 0.83 +0.0 325,692 + yafD HEPCGN_07935 0.83 +0.1 325,693 - yafD HEPCGN_07935 0.83 -0.2 325,817 - +0.1 325,866 + -0.1 325,867 - -1.0 325,898 - +1.1 325,904 - +0.1 325,940 + -0.2 325,943 - -0.6 325,943 - -0.2 325,953 - +0.0 325,953 - +0.0
Or see this region's nucleotide sequence