Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flhD and flhC are separated by 2 nucleotides flhC and motA are separated by 126 nucleotides motA and motB overlap by 4 nucleotides motB and cheA are separated by 4 nucleotides
HEPCGN_04520: flhD - flagellar transcriptional regulator FlhD, at 786,967 to 787,317
flhD
HEPCGN_04525: flhC - flagellar transcriptional regulator FlhC, at 787,320 to 787,898
flhC
HEPCGN_04530: motA - flagellar motor stator protein MotA, at 788,025 to 788,912
motA
HEPCGN_04535: motB - flagellar motor protein MotB, at 788,909 to 789,835
motB
HEPCGN_04540: cheA - chemotaxis protein CheA, at 789,840 to 791,804
cheA
Position (kb) 788
789 Strain fitness (log2 ratio) -2
-1
0
1
2 at 787.079 kb on + strand, within flhD at 787.192 kb on - strand, within flhD at 787.423 kb on + strand, within flhC at 787.423 kb on + strand, within flhC at 787.424 kb on - strand, within flhC at 787.586 kb on + strand, within flhC at 787.624 kb on - strand, within flhC at 787.711 kb on + strand, within flhC at 787.795 kb on + strand, within flhC at 787.796 kb on - strand, within flhC at 787.853 kb on + strand at 787.856 kb on + strand at 787.973 kb on - strand at 788.030 kb on + strand at 788.038 kb on + strand at 788.043 kb on + strand at 788.109 kb on + strand at 788.109 kb on + strand at 788.232 kb on + strand, within motA at 788.247 kb on + strand, within motA at 788.247 kb on + strand, within motA at 788.248 kb on - strand, within motA at 788.250 kb on - strand, within motA at 788.324 kb on + strand, within motA at 788.399 kb on + strand, within motA at 788.410 kb on - strand, within motA at 788.576 kb on - strand, within motA at 788.705 kb on - strand, within motA at 788.705 kb on - strand, within motA at 789.007 kb on + strand, within motB at 789.053 kb on - strand, within motB at 789.053 kb on - strand, within motB at 789.202 kb on + strand, within motB at 789.203 kb on - strand, within motB at 789.203 kb on - strand, within motB at 789.351 kb on + strand, within motB at 789.356 kb on - strand, within motB at 789.392 kb on - strand, within motB at 789.392 kb on - strand, within motB at 789.419 kb on + strand, within motB at 789.464 kb on - strand, within motB at 789.475 kb on + strand, within motB at 789.476 kb on - strand, within motB at 789.493 kb on + strand, within motB at 789.494 kb on - strand, within motB at 789.532 kb on + strand, within motB
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 787,079 + flhD HEPCGN_04520 0.32 +0.7 787,192 - flhD HEPCGN_04520 0.64 -2.1 787,423 + flhC HEPCGN_04525 0.18 +0.0 787,423 + flhC HEPCGN_04525 0.18 +0.2 787,424 - flhC HEPCGN_04525 0.18 +0.9 787,586 + flhC HEPCGN_04525 0.46 +0.1 787,624 - flhC HEPCGN_04525 0.53 -0.2 787,711 + flhC HEPCGN_04525 0.68 -0.2 787,795 + flhC HEPCGN_04525 0.82 -0.5 787,796 - flhC HEPCGN_04525 0.82 -0.5 787,853 + -0.8 787,856 + -0.4 787,973 - -0.1 788,030 + -1.1 788,038 + +0.5 788,043 + -0.3 788,109 + +0.3 788,109 + +1.6 788,232 + motA HEPCGN_04530 0.23 +1.2 788,247 + motA HEPCGN_04530 0.25 -0.6 788,247 + motA HEPCGN_04530 0.25 +1.3 788,248 - motA HEPCGN_04530 0.25 -1.0 788,250 - motA HEPCGN_04530 0.25 +0.4 788,324 + motA HEPCGN_04530 0.34 +0.4 788,399 + motA HEPCGN_04530 0.42 +1.4 788,410 - motA HEPCGN_04530 0.43 +1.5 788,576 - motA HEPCGN_04530 0.62 +0.6 788,705 - motA HEPCGN_04530 0.77 -0.1 788,705 - motA HEPCGN_04530 0.77 +0.5 789,007 + motB HEPCGN_04535 0.11 -0.4 789,053 - motB HEPCGN_04535 0.16 -0.0 789,053 - motB HEPCGN_04535 0.16 -1.0 789,202 + motB HEPCGN_04535 0.32 -0.3 789,203 - motB HEPCGN_04535 0.32 +0.4 789,203 - motB HEPCGN_04535 0.32 -0.5 789,351 + motB HEPCGN_04535 0.48 +0.1 789,356 - motB HEPCGN_04535 0.48 +0.2 789,392 - motB HEPCGN_04535 0.52 +0.5 789,392 - motB HEPCGN_04535 0.52 +1.2 789,419 + motB HEPCGN_04535 0.55 -0.6 789,464 - motB HEPCGN_04535 0.60 +0.9 789,475 + motB HEPCGN_04535 0.61 -0.4 789,476 - motB HEPCGN_04535 0.61 +2.1 789,493 + motB HEPCGN_04535 0.63 -0.7 789,494 - motB HEPCGN_04535 0.63 +0.8 789,532 + motB HEPCGN_04535 0.67 +0.6
Or see this region's nucleotide sequence