Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_26385 and ompC2 are separated by 169 nucleotides ompC2 and yddG are separated by 257 nucleotides
HEPCGN_26385: HEPCGN_26385 - leucine Rich Repeat family protein, at 4,025,818 to 4,027,077
_26385
HEPCGN_26390: ompC2 - Outer membrane porin C 2, at 4,027,247 to 4,028,347
ompC2
HEPCGN_26395: yddG - aromatic amino acid efflux DMT transporter YddG, at 4,028,605 to 4,029,429
yddG
Position (kb) 4027
4028
4029 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4026.380 kb on + strand, within HEPCGN_26385 at 4026.472 kb on - strand, within HEPCGN_26385 at 4026.781 kb on - strand, within HEPCGN_26385 at 4026.949 kb on - strand, within HEPCGN_26385 at 4027.156 kb on - strand at 4027.203 kb on + strand at 4027.257 kb on + strand at 4027.377 kb on + strand, within ompC2 at 4027.399 kb on - strand, within ompC2 at 4027.399 kb on - strand, within ompC2 at 4027.503 kb on - strand, within ompC2 at 4027.545 kb on + strand, within ompC2 at 4027.572 kb on + strand, within ompC2 at 4027.587 kb on + strand, within ompC2 at 4027.618 kb on + strand, within ompC2 at 4027.703 kb on - strand, within ompC2 at 4027.737 kb on + strand, within ompC2 at 4027.738 kb on - strand, within ompC2 at 4027.831 kb on - strand, within ompC2 at 4027.885 kb on - strand, within ompC2 at 4027.909 kb on - strand, within ompC2 at 4028.003 kb on - strand, within ompC2 at 4028.096 kb on - strand, within ompC2 at 4028.097 kb on + strand, within ompC2 at 4028.778 kb on + strand, within yddG at 4029.034 kb on - strand, within yddG at 4029.053 kb on + strand, within yddG at 4029.077 kb on - strand, within yddG at 4029.106 kb on + strand, within yddG at 4029.119 kb on - strand, within yddG at 4029.189 kb on - strand, within yddG at 4029.263 kb on + strand, within yddG at 4029.296 kb on + strand, within yddG at 4029.297 kb on - strand, within yddG
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,026,380 + HEPCGN_26385 0.45 -0.4 4,026,472 - HEPCGN_26385 0.52 -0.4 4,026,781 - HEPCGN_26385 0.76 -1.5 4,026,949 - HEPCGN_26385 0.90 +0.2 4,027,156 - -0.0 4,027,203 + -0.4 4,027,257 + -2.8 4,027,377 + ompC2 HEPCGN_26390 0.12 -1.4 4,027,399 - ompC2 HEPCGN_26390 0.14 -0.6 4,027,399 - ompC2 HEPCGN_26390 0.14 -1.4 4,027,503 - ompC2 HEPCGN_26390 0.23 -1.7 4,027,545 + ompC2 HEPCGN_26390 0.27 -1.4 4,027,572 + ompC2 HEPCGN_26390 0.30 +0.2 4,027,587 + ompC2 HEPCGN_26390 0.31 +0.6 4,027,618 + ompC2 HEPCGN_26390 0.34 +0.0 4,027,703 - ompC2 HEPCGN_26390 0.41 +0.2 4,027,737 + ompC2 HEPCGN_26390 0.45 -0.5 4,027,738 - ompC2 HEPCGN_26390 0.45 -0.1 4,027,831 - ompC2 HEPCGN_26390 0.53 -0.8 4,027,885 - ompC2 HEPCGN_26390 0.58 -0.6 4,027,909 - ompC2 HEPCGN_26390 0.60 -0.3 4,028,003 - ompC2 HEPCGN_26390 0.69 -0.0 4,028,096 - ompC2 HEPCGN_26390 0.77 +1.8 4,028,097 + ompC2 HEPCGN_26390 0.77 +0.2 4,028,778 + yddG HEPCGN_26395 0.21 -0.5 4,029,034 - yddG HEPCGN_26395 0.52 -0.9 4,029,053 + yddG HEPCGN_26395 0.54 -1.1 4,029,077 - yddG HEPCGN_26395 0.57 +1.1 4,029,106 + yddG HEPCGN_26395 0.61 +1.1 4,029,119 - yddG HEPCGN_26395 0.62 +1.6 4,029,189 - yddG HEPCGN_26395 0.71 -0.6 4,029,263 + yddG HEPCGN_26395 0.80 -0.7 4,029,296 + yddG HEPCGN_26395 0.84 +0.1 4,029,297 - yddG HEPCGN_26395 0.84 -0.3
Or see this region's nucleotide sequence